Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq131 100 2e-16 >seq131 Length=856804 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || | || ||||| || || || || ||||| || || ||||| | Sbjct 308113 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308172 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||| ||||| ||||| ||||| | ||||||||| | ||| Sbjct 308173 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308232 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||| || ||| | || | | ||| ||| | || || Sbjct 308233 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308292 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| ||||||| || | ||||| ||||||||||||||| Sbjct 308293 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATC 308340 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || | || ||||| || || || || ||||| || || ||||| | Sbjct 308341 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308400 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||| ||||| ||||| ||||| | ||||||||| | ||| Sbjct 308401 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308460 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||| || ||| | || | | ||| ||| | || || Sbjct 308461 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308520 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| ||||||| || | ||||| ||||||||||||||| Sbjct 308521 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATC 308568 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || | || ||||| || || || || ||||| || || ||||| | Sbjct 308569 CCTCCTCTCAATCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGAC 308628 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||| ||||| ||||| ||||| | ||||||||| | ||| Sbjct 308629 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308688 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || |||||| ||| || ||| | || | | ||| ||| | || || Sbjct 308689 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACT 308748 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| ||||||| || | ||||| ||||||||||||||| Sbjct 308749 TCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCATC 308796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || |||||||| | || || ||| | || || | ||| ||||| ||||| Sbjct 307921 TCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 307980 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| | ||||||||| | ||| | | || |||||| ||| || ||| | || Sbjct 307981 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTC 308040 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||| ||| | || || |||| ||||| ||||||| || | ||||| ||| Sbjct 308041 TCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACA 308100 Query 39274 AAGATTTGCATC 39285 |||||||||||| Sbjct 308101 AAGATTTGCATC 308112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429517356705635