Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq221 149 4e-31 seq64 136 3e-27 seq131 131 1e-25 seq148 82.4 5e-11 >seq221 Length=486136 Score = 149 bits (164), Expect = 4e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || ||||| || || ||||| || || ||| | ||||| || | Sbjct 79485 AAAATGCAGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAACCT 79426 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| ||| |||||| | ||||| | |||| || |||||||| || | || ||||| Sbjct 79425 TCGGATACTATTGAAAATGTTAAAGCCAAAA-TTCAAGACAAAGAGGGAATCCCACCAGA 79367 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || || || || ||||| || |||||| |||| |||| ||| ||| | |||||| Sbjct 79366 TCAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGATTA 79307 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 |||||| ||||||||||| || | ||| | ||||| Sbjct 79306 CAACATTCAAAAAGAGTCTACTCTTCATCTTGTTTT 79271 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || ||||| ||||| || ||||| || | | Sbjct 78798 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCTTCA 78739 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| ||||| |||||||||||| | || || || ||| Sbjct 78738 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78679 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||| | || ||||| || || || |||||||||| || |||||| || |||| Sbjct 78678 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTT--CTGACTACA 78621 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || || || ||| | ||| | || || | ||||| || || Sbjct 78620 ACATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGG 78572 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || ||||| ||||| | ||||| || | | Sbjct 79026 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCTTAGAAGTCGAACCTTCA 78967 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| ||||| |||||||||||| | || || || ||| Sbjct 78966 GACACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAA 78907 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 |||||| | || ||||| || || || |||||||||| || |||||| || |||| Sbjct 78906 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTT--CTGACTACA 78849 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || || || || ||| | ||| | || || | ||||| || || Sbjct 78848 ACATCCAGAAGGAATCGACACTCCATCTCGTACTACGATTGCGTGGTGG 78800 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||||| ||||| ||||| || || | || || || | | Sbjct 79254 ATGCAGATCTTTGTTAAAACCCTTACGGGTAAAACTATAACGTTAGAGGTAGAGCCTTCT 79195 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || ||||| ||||| ||||| | || ||||||||| Sbjct 79194 GATACTATTGAAAACGTGAAGGCTAAAATCCAAGACAAGGAAGGCATCCCCCCAGATCAA 79135 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || |||||| | ||||| | || ||| | ||| |||||| Sbjct 79134 CAACGTTTGATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCCGACTACAAC 79075 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||| | ||| | || || | |||| || || Sbjct 79074 ATCCAGAAGGAATCTACACTCCATCTCGTACTACGTCTGCGTGGTGG 79028 >seq64 Length=1946208 Score = 136 bits (150), Expect = 3e-27 Identities = 175/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||||||||| ||||| ||||| ||||| || || || || ||||| || Sbjct 785930 AAAATGCAGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCC 785871 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || ||||| |||||| | || |||||| Sbjct 785870 TCTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGAT 785811 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| || ||||| || || |||||| ||||||| | || || ||| ||| ||| Sbjct 785810 CAGCAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTAC 785751 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTT 23847 || || ||||| || || || || ||| | || || || | ||||||| | ||| ||| Sbjct 785750 AATATTCAAAAGGAATCTACCTTGCATCTTGTGTTGAGACTTAGAGGAGG-TGAGCTGTT 785692 >seq131 Length=856804 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||| | || || |||||||||||| | |||||||| || Sbjct 309026 AAGATGCAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCC 308967 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| ||||| | |||| | ||||| ||||| | || ||||| Sbjct 308966 TCCGACACGATCGAGAATGTTAAAGCTAAAA-TCCAGGACAAGGAAGGAATTCCCCCAGA 308908 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||||||||| || | ||||| | |||||| | ||||| Sbjct 308907 CCAGCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTA 308848 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||| ||||| || || || | || || || |||| ||| ||||||| Sbjct 308847 CAACATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308797 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||||||||||||| | |||||||| || | Sbjct 308111 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308052 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | | ||||| ||||| | || ||||| || Sbjct 308051 GACACGATCGAGAATGTTAAAGCTAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGACCA 307993 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || | ||||| | |||||| | ||||| || Sbjct 307992 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAA 307933 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| || || || | || ||||| |||| |||||||| ||| Sbjct 307932 CATTCAAAAGGAATCAACCCTGCACTTAGTACTAAGATTGCGAGGGGGA 307884 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||||||||||||| | |||||||| || | Sbjct 308339 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308280 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | | ||||| ||||| | || ||||| || Sbjct 308279 GACACGATCGAGAATGTTAAAGCTAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGACCA 308221 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || | ||||| | |||||| | |||||||| Sbjct 308220 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAA 308161 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || |||| ||| ||||||| Sbjct 308160 CATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308113 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||||||||||||| | |||||||| || | Sbjct 308567 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308508 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | | ||||| ||||| | || ||||| || Sbjct 308507 GACACGATCGAGAATGTTAAAGCTAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGACCA 308449 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || | ||||| | |||||| | |||||||| Sbjct 308448 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAA 308389 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || |||| ||| ||||||| Sbjct 308388 CATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308341 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || ||||||||||||||| | |||||||| || | Sbjct 308795 ATGCAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCC 308736 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| ||||| | || | | ||||| ||||| | || ||||| || Sbjct 308735 GACACGATCGAGAATGTTAAAGCTAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGACCA 308677 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || | ||||| | |||||| | |||||||| Sbjct 308676 GCAGAGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAA 308617 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | || || || |||| ||| ||||||| Sbjct 308616 CATTCAAAAGGAATCAACCCTGCACTTGGTACTAAGATTGAGAGGAGG 308569 >seq148 Length=419512 Score = 82.4 bits (90), Expect = 5e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| ||||| ||||| ||||| || || || Sbjct 143864 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTCGAACCC 143805 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | ||| | ||||| |||||||| || | || || || Sbjct 143804 TCGGACACCATCGAGAATGTCAAAGC-TAAAATACAAGACAAAGAGGGAATCCCTCCGGA 143746 Query 23727 TCAACAG 23733 || ||| Sbjct 143745 CCAGCAG 143739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987375340660