Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq131 150 4e-31 seq221 143 6e-29 seq64 143 6e-29 >seq131 Length=856804 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||| ||||| | |||||||| | || || | || Sbjct 308124 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308183 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| |||||| || || |||||||||| || ||||| || ||||| |||||||| Sbjct 308184 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308243 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| || ||| ||||| ||||| |||| ||| || || || ||||| Sbjct 308244 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308303 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || ||||||| || | |||||| Sbjct 308304 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||| ||||| | |||||||| | || || | || Sbjct 308352 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308411 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| |||||| || || |||||||||| || ||||| || ||||| |||||||| Sbjct 308412 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308471 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| || ||| ||||| ||||| |||| ||| || || || ||||| Sbjct 308472 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308531 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || ||||||| || | |||||| Sbjct 308532 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||| ||||| | |||||||| | || || | || Sbjct 308580 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308639 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| |||||| || || |||||||||| || ||||| || ||||| |||||||| Sbjct 308640 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308699 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| || ||| ||||| ||||| |||| ||| || || || ||||| Sbjct 308700 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308759 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || ||||||| || | |||||| Sbjct 308760 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||| ||||| | || ||||| | || || | || Sbjct 307896 TCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGACAGGGTGCGTCC 307955 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| |||||| || || |||||||||| || ||||| || ||||| |||||||| Sbjct 307956 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308015 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| || ||| ||||| ||||| |||| ||| || || || ||||| Sbjct 308016 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308075 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || || ||||||| || | |||||| Sbjct 308076 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| || || ||||| ||||| | |||||||| | || || | || Sbjct 308808 TCTTAGTACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCC 308867 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| |||||| || || |||||||||| || ||||| || ||||| |||||||| Sbjct 308868 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308927 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||| ||||| ||| || || ||| ||||| ||||| |||| ||| || || || |||| Sbjct 308928 GTCCTGGAT-TTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGA 308986 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||| ||||| || || ||||| | || | ||||| || Sbjct 308987 TCGTTTTGCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 >seq221 Length=486136 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || |||| ||||| || | | || | || ||| Sbjct 78815 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78874 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || ||||||||||| || |||||||| |||||| Sbjct 78875 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78934 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || || |||||||| | ||| || ||||| ||||| || Sbjct 78935 TGGAT-TTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGT 78993 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 78994 TTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 138 bits (152), Expect = 3e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || |||| ||||| || | | || | || ||| Sbjct 78587 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78646 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || ||||||||||| || |||||||| |||||| Sbjct 78647 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78706 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || || |||||||| | ||| || |||| ||||| || Sbjct 78707 TGGAT-TTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGT 78765 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 78766 TTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| ||||| || | | || | || ||||| |||||||| ||| Sbjct 78374 GTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCTTCCAGCTGCTTACCA 78433 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || || |||||||| || || || ||||||||||||||||| ||| ||| Sbjct 78434 GCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTT 78493 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| || |||||||| |||| ||| || |||| ||||| || ||||| ||||| || Sbjct 78494 ACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGGGTGATGGTTTTGCCAGTCAAGGTC 78553 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 78554 TTGACGAAGATCTGCAT 78570 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || |||| ||||| |||| | ||| | |||||| Sbjct 79043 AGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 79102 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || |||||||| || | |||||||| || || || || |||||||||||| Sbjct 79103 TCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATGCCTTCCTTGTCT 79162 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || |||||| ||| || || || || | || || |||||||| || || Sbjct 79163 TGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACCTCTAACGTTATAGTT 79222 Query 225682 TTGCCCGTCAAAGTTTT 225698 || ||||| | ||||| Sbjct 79223 TTACCCGTAAGGGTTTT 79239 >seq64 Length=1946208 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| ||||| || | || ||||| ||||| | |||||| |||| || || | Sbjct 785709 AAGTCTCAACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACG 785768 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | || || |||||||| || | ||| || || || || ||||||||||| Sbjct 785769 ACCATCTTCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTC 785828 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||||||||| ||| ||| ||||||||||| |||| || || |||| || Sbjct 785829 CTTGTCTTGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGT 785888 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || ||||| | || || | ||| | |||||||| Sbjct 785889 AATGGTTTTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192448768144130