Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq445 233 2e-56 seq131 96.9 3e-15 >seq445 Length=79264 Score = 233 bits (258), Expect = 2e-56 Identities = 581/876 (66%), Gaps = 11/876 (1%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || ||||||||||| ||| | | || || ||||| || |||||| | Sbjct 27713 GCTTACTTCGTTGAATGGGGTGTATACCCCAGGAAATTCCCCGTCGATCGTGTGCCGATT 27654 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | ||| | || |||||||| || || |||||||| || || ||||| || Sbjct 27653 CCAAATCTCACACATCTTCTTTACGGTTTCATACCGATATGTGGGGGTGATGGCATTAAT 27594 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | ||| || || |||||| | || | || || || ||| | ||||| Sbjct 27593 GACAGTTTAAAAGAAATCGAGGGAAGTTTTCAAGCACTACAGCGTTCATGCAGTGGTCGG 27534 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || ||||| || || ||||| || || |||||| || | || ||||| |||| ||| Sbjct 27533 GAAGATTTTAAGGTTTCCATCCATGATCCTTGGGCTGCTTTACAGAAACCTCAAAGAGGT 27474 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 | || | ||||| || || || |||||||| ||||| ||||||||| | ||| Sbjct 27473 CTATCCTCCTGGAATGAACCTTATAAAGGCAATTTTGGTCAATTGATGTCATTGAAACAA 27414 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 || || || || | || ||| |||| || || || |||||||| || | || || ||| Sbjct 27413 GCTAAACCAGACTTGAAGATTTTACCATCAATTGGTGGGTGGACTTTAGCTGATCC-TTT 27355 Query 109501 TATTTTATGCAC-GATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTT 109559 | || | ||| ||| | || || ||| || ||||| || || || | Sbjct 27354 CTTCTTCTTCACTGATAAGAGTAAGCGACAGCGATTTGTAGAATCTGTTAAAGATTTCCT 27295 Query 109560 ACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGG 109619 | ||||||||||||||||| || || ||||| |||||||| || || || || || Sbjct 27294 TTTAACCTGGAAATTCTTTGACGGTGTTGATATTGACTGGGAGTTCCCTGGTGGTAAAGG 27235 Query 109620 TGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTAAA 109679 ||| || || |||| || || | || | ||| || ||| | | Sbjct 27234 TGCTAACCCAGACCTCG--GAAGC-CCAGAAGATGGTGCTGTTTACGTTAGTTTGATGGA 27178 Query 109680 AGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCA---ACAAAACGTACGAATT 109736 ||| || || | ||| | || || || | | || |||| |||||||||||| | Sbjct 27177 AGAATTACGTGAAATGCTTGATGATTT---ATCTGCTACCACTGGTAAAACGTACGAACT 27121 Query 109737 GACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCA 109796 ||| || || || || || | || |||||| | || ||||||||||| ||||| Sbjct 27120 GACCTCAGCAATCAGTGCTGGATGGGACAAAATTCAGGTTGTCGATTACGCAAAAGCGCA 27061 Query 109797 ACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAACAC 109856 |||||| ||||| | || || | |||| |||||||||||||| || |||||||| Sbjct 27060 ACAATACATGGACCACATTTTCGTTATGAGTTACGATTTCAAAGGAGCATGGTCAAATGA 27001 Query 109857 GGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACAC 109916 || || |||| || | |||| || || | |||||||| || || ||||| Sbjct 27000 TACTTTGGGACATCAAACTCCGTTGTATGCACCGGCATGGAATCCTAAAGAGACTTACAC 26941 Query 109917 GACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAAT 109976 ||||| | | || ||| | |||| ||| ||||| || ||||| || || | Sbjct 26940 AACCGACTTCGGTGTGAAATATTTGTTAGCTCAAGGTGTGTCACCGAAAAAGATCGTAGT 26881 Query 109977 TGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGT 110012 ||| || || ||||| || || || ||||| || || Sbjct 26880 TGGTGTTGCTATGTATGGTCGAGGATGGACTGGGGT 26845 >seq131 Length=856804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||||||||||| || | ||||| |||||||| |||||||| || ||||| | | Sbjct 307885 CCCCCTCGCAATCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGAC 307944 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || |||||| || || ||||| ||| | ||||| || || |||||| ||| Sbjct 307945 AGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 308004 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||| ||||| || || ||| |||| | | ||| || | || ||| Sbjct 308005 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGG--GTTCAA 308062 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || || ||||| || || |||||||| | ||| |||||||| Sbjct 308063 CTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409633864162305