Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq149 122 7e-23 >seq149 Length=636072 Score = 122 bits (134), Expect = 7e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||| |||||| || || || || || ||||||||| || || | |||||| ||| Sbjct 239141 GGGTCCCTAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATA 239082 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 |||||||| || || || |||||||| || || || || |||||||| | | || | | Sbjct 239081 GCAATCTGGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGT 239022 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 ||||| | || || ||||||||||| || || |||||||||||||| ||||| Sbjct 239021 TCTACGAGATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTA 238962 Query 4989 ATAAAGT 4995 ||||||| Sbjct 238961 ATAAAGT 238955 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 |||| ||| |||||||||||||||||||| || || || || || || |||||||| | Sbjct 238709 TTAGATAAGTCAACTTCTTCAACAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGC 238650 Query 5097 CAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 || |||||||||||||| || || | ||| ||||||| Sbjct 238649 CATATATCAGGATACTGGATGGGGAATATAACAAATC 238613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427021520821535