Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq219 551 8e-152 seq149 125 1e-23 >seq219 Length=603346 Score = 551 bits (610), Expect = 8e-152 Identities = 1009/1465 (69%), Gaps = 25/1465 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| |||| ||||||||| |||||||| ||||||| ||||| |||| || Sbjct 377166 GCTGGTTTTGTTCGTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAG 377225 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || ||| ||| | ||| |||| | || || || | ||| || || | ||||||||| Sbjct 377226 TGTATGGATGTTAATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTT 377285 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || || || || |||||||| || || ||||||| || | ||||| | ||| ||| Sbjct 377286 TGGTCTATAAAGGCTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCC 377345 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTGTATTTT--GAATGGAA 77039 || | ||||| | | | | |||| || | || | | || || || |||||||| Sbjct 377346 CATACTGTTTTATACAGATCTCTGATGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAA 377405 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| | |||||| |||||| || || |||| ||| | | | | || ||| Sbjct 377406 CCATTGTTATGTATAATGAGATTCTTCATTTCTTCATCCCATAGATCCGCTTGAGTCAAA 377465 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 || | | |||||| | || || | |||||| ||||||||||| |||| | |||| Sbjct 377466 TCTGTTAAAAGATGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAA 377525 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || ||| | ||||| | |||||||| ||||| | |||||||| || || ||| Sbjct 377526 ATGTTTGATGTAAAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCA 377585 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279 || ||||| || || | | | ||| | |||||||| || ||||| ||||| Sbjct 377586 GTGGGCATTGGCGCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTTA 377645 Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 ||| ||||||||||||||||| ||| | ||| | |||||| |||||||| Sbjct 377646 AGAGCAGCCCAATCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATC 377705 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || | |||||| ||| | || || ||| || ||| | || |||| ||| Sbjct 377706 CCTTGGCTAGCAGGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCA 377765 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTT 77457 ||||| || || | || |||||||| || ||||| || || | || ||| || || || Sbjct 377766 CAACTTGCCTCGAGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATT 377825 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAA-AAGAATAAAGGCATCTGCTAATCCCTGA 77516 | |||| ||| ||| |||| |||| | | ||||| ||| ||||| |||||||||||| Sbjct 377826 GC-CTTCTC-ACTCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTGA 377882 Query 77517 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAA 77576 || || |||||||| || || ||| || |||| || |||| || || || | ||||||| Sbjct 377883 ACGCCGATACCAATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAA 377942 Query 77577 TAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGT 77636 | || | || |||||||| || |||||| ||| |||| || || || ||| Sbjct 377943 AAGTTGACATCAATAATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGT 378002 Query 77637 TTAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 || ||||| ||| || | | ||||||||| || | |||||| || || ||||| Sbjct 378003 TTTTTGAAATCGAATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTG 378062 Query 77697 CAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 || || || ||||||| | || | | ||||| | || || ||||| | |||||| || Sbjct 378063 CACACGGCAACCTCATCTTCCGAT-GTATATTCAACAATTTCAGTACACAAATTACTGCA 378121 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 ||||||||| || ||||||| ||| || || ||| | || |||| || || || || || Sbjct 378122 TTTGATAGTTCCAAGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCAT 378181 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AG--- 77871 | ||||| || ||||| | || | ||| ||||| | |||||| | | ||| || Sbjct 378182 GTATGGAGTACCAGTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATA-TCTGAGCGC 378240 Query 77872 ---CTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAA 77928 ||| | | | || ||| | ||| |||||||| ||| | | ||||| Sbjct 378241 GTACTTGCCTGACAAATCTGT------TTTCTTGTTCATATTTCTCATACAACGCTTCAA 378294 Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988 |||| || || || ||||| | || || || | || || ||||||| ||| | Sbjct 378295 ATTCTTCACCGTAACAATCATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAAT 378354 Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 78048 ||| | || ||| | ||||| || | ||| ||||||||||||||| ||| | | Sbjct 378355 TTTCATTTCTCTCAACCCTCTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATT 378414 Query 78049 CTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATAT 78108 ||| || || |||||| |||||||| ||||| || | ||| | |||||| | |||| Sbjct 378415 CTCTGGCCCTCACTTCTTCCTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATAT 378474 Query 78109 CAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGAT 78168 |||||||||| || || | ||| || || | |||| || |||||||| || || |||| Sbjct 378475 CAGAATGCCACGGCTCCACATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGAT 378534 Query 78169 CTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTC 78228 | | |||||| || ||||||||||| || |||||||| |||| | || || || | | Sbjct 378535 CAACATATCTTGCTGTGTTATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATAC 378594 Query 78229 CATTTGTTCCAGAAATATAACTTCC 78253 ||||||| |||| || ||| |||| Sbjct 378595 CATTTGTACCAGCTATGTAAGTTCC 378619 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78751 GtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAAT 78810 ||||||| |||||||| || |||||||||| ||| | | ||||||| ||||||||||| Sbjct 379395 GTTTTTTAGTTTCCTTATGAAGATTAGATATAGCAAGCCGGGCAGCTAAAATAGCATAAT 379454 Query 78811 CAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAG 78870 | ||||| | ||||| || |||||| | || || || | | |||| || || | | Sbjct 379455 CGGGATGGTCCGTAGTCATTGTAGCTGCTGTCTCAGCTGCAAGATTATCCAATTCCACTG 379514 Query 78871 TTGTGACCCCATTATATAGTCC 78892 | || || ||| ||||| ||| Sbjct 379515 TAGTAACACCAGAATATATTCC 379536 >seq149 Length=636072 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 || ||||| || | ||| ||||||||| ||||||| |||||| || || ||||| || Sbjct 239129 TATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCTGGAAA 239070 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || || || |||||||| || || | ||| || ||| | || ||||| | | |||| Sbjct 239069 CCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGAGATTC 239010 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||||||||| ||||| || |||||||| || |||||||| |||||||| | | || Sbjct 239009 TCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGTGTCTT 238950 Query 48591 TC 48592 || Sbjct 238949 TC 238948 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 ||||||||||| ||| | ||| ||| || || | ||||||||| || || | || | Sbjct 239461 CTTCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCT 239402 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | | ||| || || | || ||| ||||| ||||| || ||||| || || ||||||| Sbjct 239401 TCATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 239342 Query 48283 CGGTAAGTCTCTCTCCGTAACTGG-CTTCGT--TGTGTATCCACCGTTGTGCCCAATCAG 48339 | || | |||||| | ||| | || | || |||||| | | |||||||| | Sbjct 239341 CAACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTG 239282 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||||||||||||| || | || || |||||||| || || || Sbjct 239281 CCTTCTTCTTTACACAGGGTAAAGTCTCAATAGCATTGAACAGGAA 239236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694621953272800