Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq219 623 2e-173 seq149 123 4e-23 >seq219 Length=603346 Score = 623 bits (690), Expect = 2e-173 Identities = 1218/1788 (68%), Gaps = 59/1788 (3%) Strand=Plus/Plus Query 75352 TGACTTTAT-TTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTAC 75410 ||| |||| |||| |||||| | ||||| || || | | || ||||||||||| | Sbjct 377119 TGATTTTAACTTTAGACTTATCTACGGTGAATTGTATAGCATTGGCAGCTGGTTTTGTTC 377178 Query 75411 GTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTA 75470 ||| ||||||||| |||||||| ||||||| ||||| |||| || || ||| ||||| Sbjct 377179 GTAAATAGTACATGCCAGTTTTCAGACCCATTTTCCATGCGTAAAAGTGTATGGATGTTA 377238 Query 75471 GTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAG 75530 ||| |||| | || || || | ||| || || | ||||||||||| || || || | Sbjct 377239 ATTTTCCATAATTTGGTTCTGCGACATGTATGTTAAATGACTGACTTTGGTCTATAAAGG 377298 Query 75531 CTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGA 75590 ||||||| || || ||||||| || | ||||| | ||| ||||| | ||||| Sbjct 377299 CTCCTCTGTCCGCAGCCATTTGAATTGTTGTCTTGACGGAAATCTCCCATACTGTTTTAT 377358 Query 75591 AAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATA 75647 | | | | |||| || | || | | || | || |||||||| || | | || Sbjct 377359 ACAGATCTCTGATGTCTTTGGGTATTGCTTCAATGTTCTGAATGGAACCATTGTTATGTA 377418 Query 75648 TAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCG-GTTAAAACTCTAAGGAGA 75706 |||| |||||| || || |||| ||| | | | || | || ||| || | | ||| Sbjct 377419 TAATGAGATTCTTCATTTCTTCATCCCATAGATC-CGCTTGAGTCAAATCTGTTAAAAGA 377477 Query 75707 TGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTA 75766 ||| | || || | |||||| ||||||||||| |||| || |||||| || ||| Sbjct 377478 TGATGGTTGACCACTTGAAACTCTCCAGACAAAACTCGTCTTTGGTAAATGTTTGATGTA 377537 Query 75767 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGT 75826 | ||||| | |||||||| ||||| | |||||||| || || ||||| ||||| || Sbjct 377538 AAAGGTTCAAACGATTCATTATTTCCTAGTATTTGAGCGGTGGAGGCAGTGGGCATTGGC 377597 Query 75827 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 75886 || | | | ||| | |||||||| || ||||| ||||| ||| |||| Sbjct 377598 GCTAATAGAAGGGAATTACGAAGACCATGCTTTGCAATTTTTTCTTTAAGAGCAGCCCAA 377657 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||||||||||| ||| | ||| | |||||| |||||||| || | ||||||| Sbjct 377658 TCCCAAAGATCTGTGGGTGTTTTGTTCCACATATCGTACTGTAGAATCCCTTGGCTAGCA 377717 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 ||| | || || |||| || || | || |||| || ||||| ||||| Sbjct 377718 GGACTTCCCTCGTAAGTGCTGTAAACACCATCTCTCTCGGCTAACTCACAACTTGCCTCG 377777 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCGCTTCAAGAC 76064 | |||||||||||| || ||||| || || | || |||||| || |||| |||| || Sbjct 377778 AGCGCACCGTAATAGATCGTTTCAAATATTTGCTGATTAAGTAATATTGC-CTTCTC-AC 377835 Query 76065 TATCAAAAGGATAATGTAA-AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 | ||| | || |||| | | ||||| ||||||||| |||| ||||||||| || |||||| Sbjct 377836 TCTCATACGG-TAATCTCATAAGAACAAATGCATCCGCTAATCCCTGAACGCCGATACCA 377894 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCT 76183 || || || ||| || |||| || ||| || || || | ||| ||| | || | ||| Sbjct 377895 ATGGGCCTGTGTTTCATATTCGAGTTTTTCGCCTCCGGTACAGGATAAAAGTTGACATCA 377954 Query 76184 ATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCA 76243 |||||||| || |||||| ||| |||| || || || ||||| ||||| Sbjct 377955 ATAATTTTGTTCAGATTTTGTGTAACAGTTTTAGTTACTTCTTTCAGTTTTTTGAAATCG 378014 Query 76244 AATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACC 76303 |||||| | | ||||||||||| |||||||| || || ||||| || ||||| ||| Sbjct 378015 AATTTTTTGTTTTCAACAAACATATTTAGAGCTATTGAGGCGAGATTGCACACGGCAACC 378074 Query 76304 TCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCA 76363 |||| | | ||||| | || || || || | |||||| || |||||||||||| Sbjct 378075 TCATCTTCCGATGTATATTCAACAATTTCAGTACACAAATTACTGCATTTGATAGTTCCA 378134 Query 76364 AGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCA 76423 ||||||| ||| || || ||| ||||||||| || || || || | | ||||| ||| Sbjct 378135 AGATTTTTTTGATTACTTTTTCTGTTACATGCATCTTTGTACAGCATGTATGGAGTACCA 378194 Query 76424 GTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTT 76482 ||||| | || | ||| ||||| | |||||| | | ||| ||| || | Sbjct 378195 GTTTCGACTTGCGCTTCAATAATGGCTTTCCATAATA-TCTGAGCGCGTACTTGCCTGAC 378253 Query 76483 GTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATC 76542 ||| || ||| |||||||| ||| ||| ||||||||| || || || ||| Sbjct 378254 AAATCTGTTTTCTTGTTCATATTTCTCATACAACGCTTCAAATTCTTCACCGTAACAATC 378313 Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602 || | || ||||| | || |||||||||| ||| | ||| | || ||||| Sbjct 378314 ATAAAGCCCTGGACAGTTATGGGGACACATCAGACTCCAATTTTCATTTCTCTCAACCCT 378373 Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||| || | ||| ||||||||||||||| ||| | |||| || || |||||| Sbjct 378374 CTTCATGAACAAATCTGGTATCCATAGAGCATAAAACAATTCTCTGGCCCTCACTTCTTC 378433 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 |||||||| ||||| || | ||| | ||||| | |||||||||||||| || || | Sbjct 378434 CTTTCCTGTGTTCTTCTTTAAATCCAAAAACTCGAAGATATCAGAATGCCACGGCTCCAC 378493 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||| || || | | ||||| |||||||| || || ||||| | |||||| || ||||| Sbjct 378494 ATAGATGGCGAATGCTCCCGGACGTTTATTGCCCCCTTGATCAACATATCTTGCTGTGTT 378553 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 |||||| || |||||||| |||| | || || || |||||||||| |||| || || Sbjct 378554 ATTATACACCCTCAACATCGGAACGAGTCCATTTGAAATACCATTTGTACCAGCTATGTA 378613 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 | |||| || ||| | || | | || || || Sbjct 378614 AGTTCC-------------TT-----TAGCT----------CTTATACAAT----GA-AT 378640 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 || || |||| ||| || || || |||||||| || ||||| || Sbjct 378641 ATGAAGAC-------CAAT-----ATAAATTCCTTCAATACTATCGTCTTTCATGCCAAT 378688 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 |||||||||| |||| ||| | ||| | || |||||||||||| || Sbjct 378689 AAGAAAACAGGATGACAACTGAGGTCTTGGAGTCGCAGCTGAGAACAATGTAGGACTCGC 378748 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCA 77082 ||| ||||| |||| ||||| | | ||||||||| | ||| | || || ||||| Sbjct 378749 ATGTGTGAAATATTTCTCAGACAACAAATTGTATGTGTTTATAGCAGCATCAATATCTTT 378808 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 | |||||||| | ||| |||||||||| |||||| || || ||||| Sbjct 378809 ATCGTGAATTCCAATAGCAACACGCATCAGCATATGTTGTGGACGTTC 378856 >seq149 Length=636072 Score = 123 bits (136), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 46895 TAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCT 46954 ||| ||||||||| || | ||| ||||||||| || |||| ||||| ||||| |||| Sbjct 239134 TAATATATGTATCAATCAGAAGTGAATACATTTCCGAGTGAACATTTTCCATAGCAATCT 239075 Query 46955 GAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACA 47014 | || || || || ||||| || ||||| | ||| || || | || ||||| | Sbjct 239074 GGAAACCATAGAAGCATCTCGCCTCAGTCACCTGAACTTCCTGGGAGAAGCGTTCTACGA 239015 Query 47015 AATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT 47074 ||||||||| ||||| ||||| || |||||||| ||||||||||| |||||||| | Sbjct 239014 GATTCTCATTTACTATACCATCTGATGCCGCAAAAAACGCCAATACATGCTTAATAAAGT 238955 Query 47075 ATTTTTCA 47082 | ||||| Sbjct 238954 GTCTTTCA 238947 Score = 109 bits (120), Expect = 8e-19 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 ||||||||||| ||| | ||| ||| || || | || ||||| || || | ||| | Sbjct 239461 CTTCATCTCTAGAAATGAGTTCATTACTGAAAGTCAAACCGGGCATGAGACCTCTCTTCT 239402 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | | ||| || |||| || ||| ||||| ||||| || ||||| ||||| || |||| Sbjct 239401 TCATCCAGAAGATAGAAGCAAAACTACCAGAGAAGAAAATCCCTTCAACAGCAGCAAATG 239342 Query 46772 CGACAAGTCTCTCTCCGTAACTGG-CATCATTATG--AATCCACCTTTGAGCCCAATCAG 46828 | |||| | |||||| | ||| | || | || ||||||| | |||||||| | Sbjct 239341 CAACAATGCGCTCTCCAAATGTGGCCGTCTTACTGGCAATCCACTGAAGGGCCCAATCTG 239282 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||| ||||||||||| || | || || |||||||| || || || Sbjct 239281 CCTTCTTCTTTACACAGGGTAAAGTCTCAATAGCATTGAACAGGAA 239236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712886321486400