Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq221 120 7e-22 seq131 111 4e-19 seq148 93.3 1e-13 >seq221 Length=486136 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | ||| | |||||||| || ||||||||||| || | | || Sbjct 78350 CTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTA 78409 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || || || || ||||| || | ||| ||||| | | ||| ||| Sbjct 78410 CGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGGATGCCT 78469 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| |||||| || ||| |||||| | |||| || || ||||| || Sbjct 78470 TCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACTTCTAGG 78529 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || | ||||| ||||||| |||||| Sbjct 78530 GTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||||||||||||||||||||| ||||||||||||| | ||| | || || || Sbjct 79274 ACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAAAGAGTACGTCCGTCCTCC 79333 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| || || ||||| | | ||||| || | | |||||| || || |||||| Sbjct 79334 AATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGA 79393 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | || ||| || ||||| | ||| || || || Sbjct 79394 ATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGACTTCCAAAGTTATGGTCTTT 79453 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || | ||||||||| Sbjct 79454 CCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || || || || ||||||||||| || | | || | || ||| Sbjct 78587 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78646 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||| ||||| | | ||| ||||| || ||| Sbjct 78647 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78706 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| |||| | |||||||| || ||||| || || || ||| Sbjct 78707 TGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAGGGTGATGGTT 78766 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 78767 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78798 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || || || || || ||||||||||| || | | || | || ||| Sbjct 78815 AGTACGAGATGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCGTCT 78874 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||| ||||| | | ||| ||||| || ||| Sbjct 78875 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCGGGAGGGATACCTTCTTTGTCT 78934 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||| ||| |||| | |||||||| || ||||| | || || ||| Sbjct 78935 TGGATTTTCGCTTTTACATTCTCAATTGTGTCTGAAGGTTCGACTTCTAAGGTGATGGTT 78994 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 78995 TTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 79026 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| || ||||| || || ||||||||||| |||| | ||| | |||||| Sbjct 79043 AGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 79102 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || ||||| || | | || || || | | ||| |||||||| ||| Sbjct 79103 TCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATGCCTTCCTTGTCT 79162 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || | || | | || ||| |||||| || | || |||||| Sbjct 79163 TGGATTTTAGCCTTCACGTTTTCAATAGTATCAGAAGGCTCTACCTCTAACGTTATAGTT 79222 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || |||| |||||| Sbjct 79223 TTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 >seq131 Length=856804 Score = 111 bits (122), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || ||||| ||||||||||| | | || | |||||||||| Sbjct 308817 CAAG-TGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTA 308875 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| |||||||| ||||||||||| | | ||||||||||| || || | Sbjct 308876 ACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGA 308935 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | |||| || || ||||| | ||| || ||||||| Sbjct 308936 TTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTGC 308995 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | || ||||| || | |||||| || Sbjct 308996 CAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || ||||| ||||||||||| | | || | |||||||||| Sbjct 308133 CAAG-TGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTA 308191 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| |||||||| ||||||||||| | | ||||||||||| || || | Sbjct 308192 ACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGA 308251 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | |||| || || ||||| | ||| || ||||| | Sbjct 308252 TCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTC 308311 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || || |||| ||||| Sbjct 308312 CAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || ||||| ||||||||||| | | || | |||||||||| Sbjct 308361 CAAG-TGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTA 308419 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| |||||||| ||||||||||| | | ||||||||||| || || | Sbjct 308420 ACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGA 308479 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | |||| || || ||||| | ||| || ||||| | Sbjct 308480 TCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTC 308539 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || || |||| ||||| Sbjct 308540 CAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || ||||| ||||||||||| | | || | |||||||||| Sbjct 308589 CAAG-TGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCTA 308647 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || ||||| |||||||| ||||||||||| | | ||||||||||| || || | Sbjct 308648 ACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGA 308707 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | |||| || || ||||| | ||| || ||||| | Sbjct 308708 TCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTC 308767 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || || |||| ||||| Sbjct 308768 CAGTTAATGTTTTTACAAAGATTTGCAT 308795 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | || || || || || ||||| ||||| ||||| | | || | || Sbjct 307896 TCTTAGTACTAAGTGCAGGGTTGATTCCTTTTGAATGTTATAATCAGACAGGGTGCGTCC 307955 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || ||||| |||||||| ||||||||||| | | ||||||||||| Sbjct 307956 ATCTTCTAACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTT 308015 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || || || || ||| ||| |||| | |||| || || ||||| | ||| || Sbjct 308016 GTCCTGGATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGAT 308075 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || | || || || |||| ||||| Sbjct 308076 CGTTTTTCCAGTTAATGTTTTTACAAAGATTTGCAT 308111 >seq148 Length=419512 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 |||||||||||||| | |||||| || || ||||| ||||| ||||||| |||| | Sbjct 143736 CCTCTGCTGGTCCGGAGGGATTCCCTCTTTGTCTTGTATTTTAGCTTTGACATTCTCGAT 143795 Query 152039 GCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098 | |||| || || || || || || || ||||| |||||||| || |||||||| | Sbjct 143796 GGTGTCCGAGGGTTCGACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAAT 143855 Query 152099 CTGCATTTT 152107 |||||| || Sbjct 143856 CTGCATCTT 143864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153741043940045