Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq131 167 6e-36 seq64 149 2e-30 seq221 145 2e-29 seq148 138 3e-27 >seq131 Length=856804 Score = 167 bits (184), Expect = 6e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || |||||||||||||| | || || ||| ||| ||| Sbjct 308108 CAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGAC 308049 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||| |||||||| |||||||| || || |||||||| Sbjct 308048 ACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAG 307989 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || ||| | ||||||||| | || || | ||||||||| | Sbjct 307988 AGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTATAACATT 307929 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||| |||||||| ||||| Sbjct 307928 CAAAAGGAATCAACCCTGCA 307909 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || |||||||||||||| | || || ||| ||| ||| Sbjct 308336 CAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGAC 308277 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||| |||||||| |||||||| || || |||||||| Sbjct 308276 ACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAG 308217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || ||| | ||||||||| | || || | ||||| ||| | Sbjct 308216 AGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATT 308157 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| |||||||| ||||| |||| Sbjct 308156 CAAAAGGAATCAACCCTGCA-CTTG 308133 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || |||||||||||||| | || || ||| ||| ||| Sbjct 308564 CAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGAC 308505 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||| |||||||| |||||||| || || |||||||| Sbjct 308504 ACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAG 308445 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || ||| | ||||||||| | || || | ||||| ||| | Sbjct 308444 AGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATT 308385 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| |||||||| ||||| |||| Sbjct 308384 CAAAAGGAATCAACCCTGCA-CTTG 308361 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || |||||||||||||| | || || ||| ||| ||| Sbjct 308792 CAAATCTTTGTAAAAACATTAACTGGAAAAACGATCACTTTGGAAGTTGAACCCTCCGAC 308733 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| ||||| |||||||| |||||||| || || |||||||| Sbjct 308732 ACGATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAG 308673 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || ||| | ||||||||| | || || | ||||| ||| | Sbjct 308672 AGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATT 308613 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| |||||||| ||||| |||| Sbjct 308612 CAAAAGGAATCAACCCTGCA-CTTG 308589 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| | || || ||||||||||| | || || ||| ||| ||| Sbjct 309020 CAGATTTTTGTGAAAACCTTAACTGGCAAAACGATCACTTTGGAAGTTGAACCCTCCGAC 308961 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || || |||||||| |||||||| || || |||||||| Sbjct 308960 ACGATCGAGAATGTTAAAGCTAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAG 308901 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| ||||| || ||| | ||||||||| | || || | ||||| ||| | Sbjct 308900 AGACTTATCTTTGCCGGCAAGCAGTTAGAAGATGGACGCACCCTGTCTGATTACAACATT 308841 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| |||||||| ||||| |||| Sbjct 308840 CAAAAGGAATCAACCCTGCA-CTTG 308817 >seq64 Length=1946208 Score = 149 bits (164), Expect = 2e-30 Identities = 170/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || || || || ||||| || ||||| ||||| || Sbjct 785930 AAAATGC---AGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAG 785874 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| || || ||||| || ||||| ||||| || || || Sbjct 785873 GCCTCTGACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCA 785814 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| ||| | || ||||| |||||||| | |||||||| | || | |||| Sbjct 785813 GATCAGCAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGAC 785754 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || | ||||| ||||| || |||||||||| |||||||| ||| Sbjct 785753 TACAATATTCAAAAGGAATCTACCTTGCATCTTGTGTTGAGACTTAGA 785706 >seq221 Length=486136 Score = 145 bits (160), Expect = 2e-29 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||| || ||||| || || ||||| || || || | || || ||| Sbjct 79485 AAAATGC---AGATTTTTGTAAAAACGCTTACTGGAAAGACCATAACTTTGGAAGTCGAA 79429 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| || ||||| |||||||| |||||||| || Sbjct 79428 CCTTCGGATACTATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGAATCCCACCA 79369 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||||||| | ||||| || |||||||| | || || ||| | |||||| ||||| Sbjct 79368 GATCAGCAACGATTGATCTTTGCAGGAAAACAATTGGAGGACGGACGTACTCTTTCCGAT 79309 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| | |||||||| || || || |||||||||||| Sbjct 79308 TACAACATTCAAAAAGAGTCTACTCTTCATCTTGTTTTG 79270 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || ||||| |||||||| || || ||| |||||| Sbjct 78795 CAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCCTAGAAGTCGAACCTTCAGAC 78736 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || || ||||||||||| |||||||| ||||| || Sbjct 78735 ACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAACAG 78676 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| ||||| || | || ||| | || || ||| || Sbjct 78675 CGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAACATC 78616 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| ||||| ||||| || Sbjct 78615 CAGAAGGAATCGACACTCCATCTCGT 78590 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || ||||| |||||| | || || ||| |||||| Sbjct 79023 CAGATCTTCGTCAAGACCTTGACTGGCAAAACCATCACCTTAGAAGTCGAACCTTCAGAC 78964 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || || ||||||||||| |||||||| ||||| || Sbjct 78963 ACAATTGAGAATGTAAAAGCGAAAATCCAAGACAAAGAAGGTATCCCTCCCGACCAACAG 78904 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| ||||| || | || ||| | || || ||| || Sbjct 78903 CGTCTGATCTTTGCTGGTAAGCAGCTGGAAGACGGCCGTACACTTTCTGACTACAACATC 78844 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| ||||| ||||| || Sbjct 78843 CAGAAGGAATCGACACTCCATCTCGT 78818 >seq148 Length=419512 Score = 138 bits (152), Expect = 3e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 143858 CAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTCGAACCCTCGGAC 143799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||||| |||||| || || || |||||||| |||||||||||||||||||| Sbjct 143798 ACCATCGAGAATGTCAAAGCTAAAATACAAGACAAAGAGGGAATCCCTCCGGACCAGCA 143740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203647993961630