Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danaus_20plexippus_20plexippus_20[genbank_20GCA_5F000235995.2_202017 -06-23] 5,395 sequences; 248,577,651 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq221 107 2e-18 seq131 98.7 9e-16 seq64 91.5 1e-13 >seq221 Length=486136 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| || ||||| || || |||||||| ||||| ||||||||| Sbjct 79028 CCACCACGCAGACGTAGTACGAGATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAG 79087 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | || || || ||||| |||| || ||||| || | ||| Sbjct 79088 AGAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 79147 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| |||||| |||| ||| | | ||| || | ||| || Sbjct 79148 ATGCCTTCCTTGTCTTGGATTTTAGCCTTC-ACGTTTTCAATAGTATCAGAAGGCTCTAC 79206 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | |||||| ||||||||||| || || || || || |||||||| Sbjct 79207 CTCTAACGTTATAGTTTTACCCGTAAGGGTTTTAACAAAGATCTGCAT 79254 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | || | ||||| || ||||||||| ||||| ||||| || Sbjct 78344 CCGCCTCTGAGACGGAGAACTAAATGCAAGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 78403 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || |||||||| || || || ||||| ||||||||||| | || Sbjct 78404 AGTGTACGGCCGTCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCTGGAGGG 78463 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||| ||||||| ||| | | | |||||| | || || Sbjct 78464 ATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTCTCTATGGTGTCGGAGGGTTCGACT 78523 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 78524 TCTAGGGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 78570 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || || ||||| || || ||| || |||||||| || ||||| Sbjct 79256 CCTCCGCGAAGACGCAAAACAAGATGAAGAGTAGACTCTTTTTGAATGTTGTAATCGGAA 79315 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | || || || || || |||| || || || || | || Sbjct 79316 AGAGTACGTCCGTCCTCCAATTGTTTTCCTGCAAAGATCAATCGTTGCTGATCTGGTGGG 79375 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | ||| ||||| ||| |||| |||| ||| || ||| || | || || Sbjct 79376 ATTCCCTCTTTGTCT-TGAATTTTGGCTTTAACATTTTCAATAGTATCCGAAGGTTCGAC 79434 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| ||||| || || || || ||||| ||||| ||||||||||| || Sbjct 79435 TTCCAAAGTTATGGTCTTTCCAGTAAGCGTTTTTACAAAAATCTGCATTTT 79485 >seq131 Length=856804 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||| |||||||| || || || |||||||| | || || Sbjct 308815 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308874 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||||||| || || || | ||| ||||| | ||||| | ||||||||| || Sbjct 308875 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC-TG 308933 Query 41774 ATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||| |||| ||| | | |||||| | || || |||| || |||||||| Sbjct 308934 GATTTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308993 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || | || || || ||||||||||| || Sbjct 308994 GCCAGTTAAGGTTTTCACAAAAATCTGCATCTT 309026 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| ||||||||||| || || |||||||| | || || | |||||||||||| || Sbjct 307921 TCCTTTTGAATGTTATAATCAGACAGGGTGCGTCCATCTTCTAACTGCTTGCCGGCAAAG 307980 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GA 41790 || || | ||| ||||| | ||||| | ||||||||| || | || |||| ||| Sbjct 307981 ATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC-TGGATCTTAGCTTTAACATT 308039 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | |||||| | || || |||| || |||||||| || || | || ||||| Sbjct 308040 CTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTTTCCAGTTAATGTTTTTAC 308099 Query 41851 GAAAATCTGCAT 41862 || || ||||| Sbjct 308100 AAAGATTTGCAT 308111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||| |||||||| || || || |||||||| | || || Sbjct 308131 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308190 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||||||| || || || | ||| ||||| | ||||| | ||||||||| || Sbjct 308191 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC-TG 308249 Query 41774 ATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || |||| ||| | | |||||| | || || |||| || |||||||| Sbjct 308250 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308309 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || ||||| || || ||||| Sbjct 308310 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||| |||||||| || || || |||||||| | || || Sbjct 308359 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308418 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||||||| || || || | ||| ||||| | ||||| | ||||||||| || Sbjct 308419 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC-TG 308477 Query 41774 ATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || |||| ||| | | |||||| | || || |||| || |||||||| Sbjct 308478 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308537 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || ||||| || || ||||| Sbjct 308538 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || ||||| |||||||| || || || |||||||| | || || Sbjct 308587 ACCAAGTGCAGGGTTGATTCCTTTTGAATGTTGTAATCAGACAGGGTGCGTCCATCTTCT 308646 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||||||| || || || | ||| ||||| | ||||| | ||||||||| || Sbjct 308647 AACTGCTTGCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC-TG 308705 Query 41774 ATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || |||| ||| | | |||||| | || || |||| || |||||||| Sbjct 308706 GATCTTAGCTTTAACATTCTCGATCGTGTCGGAGGGTTCAACTTCCAAAGTGATCGTTTT 308765 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || ||||| || || ||||| Sbjct 308766 TCCAGTTAATGTTTTTACAAAGATTTGCAT 308795 >seq64 Length=1946208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||||| || ||||| ||||| || |||||||| | ||| || | || Sbjct 785716 AACACAAGATGCAAGGTAGATTCCTTTTGAATATTGTAGTCGGATAAGGTACGACCATCT 785775 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | || || || |||||||||| ||||| || || | |||| | |||||||| Sbjct 785776 TCCAATTGTTTTCCAGCGAATATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCT 785835 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||| | | | ||||| | ||| ||||| | || || ||| Sbjct 785836 TGGATCTTGGCCTTTACATTCTCGATGGTGTCAGAGGCCTCAACCTCTAGGGTAATGGTT 785895 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || ||||| |||||||||||||| || Sbjct 785896 TTACCCGTTAGGGTCTTAACGAAAATCTGCATTTT 785930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462272823374000