Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1005 149 6e-31 >seq1005 Length=1646370 Score = 149 bits (164), Expect = 6e-31 Identities = 260/375 (69%), Gaps = 4/375 (1%) Strand=Plus/Plus Query 16944 TAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAA 17003 ||| |||||| ||||| | ||||| |||||||| || | || || ||||| || | Sbjct 377485 TAAAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCA 377544 Query 17004 GTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGG 17063 ||||||| || ||||||| || |||||| ||||| || || | ||||||||| || | Sbjct 377545 GTTCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAG 377604 Query 17064 CGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGT 17123 | || || ||||| || ||||| || || || | ||||| || | | || ||| || Sbjct 377605 CAAAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGT 377664 Query 17124 ACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAAT 17183 | | || ||| |||||| ||||||| || |||| || || || | | | ||| Sbjct 377665 AAGGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAG 377724 Query 17184 CCATCGTTTCTATGGCCTTAAATAATTTC-TCTTTTTCCTGTAGG-TCGATTATATACGT 17241 ||| || || | || || || | |||| || ||| | | || || | || || || Sbjct 377725 GCATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTT--CAGCAGAATCCTTGATGTAGGT 377782 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 || || | ||||||||||| || ||||| || || ||||||||||| || || || || Sbjct 377783 TTCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATA 377842 Query 17302 AAAGCATCGGGCTTC 17316 || || || || || Sbjct 377843 GAAACAGCGAGCCTC 377857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517359277114680