Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq2190 87.8 1e-12 >seq2190 Length=2111488 Score = 87.8 bits (96), Expect = 1e-12 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 ||||| | ||||| ||| ||| | | ||||| || || ||||| || || ||| Sbjct 1172543 CAAGGGGTTGATCAACTGAAAAATTTGATAGAAACGATACGTACAAATCCTGACGATCGA 1172602 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 || |||||| | | |||||||||||| || | || |||||| |||| || || Sbjct 1172603 CGCATGATTCTTACAGCTTGGAATCCAACGGCATTACCACTAATGGCGTTACCACCGTGC 1172662 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 || || ||||| || || ||||| |||||| | || |||||| | || || ||| Sbjct 1172663 CATTGCTTGGCCCAGTTCTATGTAGCAAATGGTGAACTGTCTTGCCAAATGTATCAAAGA 1172722 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 || | |||||||| | || || || || ||||| || | ||| | | || || | | Sbjct 1172723 TCTGCTGATATGGGTTTAGGTGTTCCCTTTAACATAGCCAGCTATTCTTTGCTGACATGC 1172782 Query 19110 ATAGTAGCGCATGTTACAGGACTTAA 19135 || |||| || || || || || || Sbjct 1172783 ATGATAGCTCACGTCACTGGTCTAAA 1172808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399363769227045