Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2190 118 8e-22 >seq2190 Length=2111488 Score = 118 bits (130), Expect = 8e-22 Identities = 186/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 101746 TAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGG 101805 |||| |||||| ||||| |||||||| || | | ||||||||| || |||||||| || Sbjct 1172806 TAGACCAGTGACGTGAGCTATCATGCATGTCAGCAAAGAATAGCTGGCTATGTTAAAGGG 1172747 Query 101806 CACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACA 101865 || ||||| ||||||||||| ||||||||||||| ||| || || || | |||| Sbjct 1172746 AACACCTAAACCCATATCAGCAGATCTTTGATACATTTGGCAAGACAGTTCACCATTTGC 1172687 Query 101866 GACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATT-TTAGGAATGTCTGAAA 101924 ||||| || || || ||| || || || ||| ||||| | | |||| | | Sbjct 1172686 TACATAGAACTGGGCCAAGCAATGGCACGGTGGTAACGCCATTAGTGGTAATG-CCGTTG 1172628 Query 101925 CATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCA 101984 ||||||||| | | ||| | || ||| ||| ||||| ||| || || |||| Sbjct 1172627 GATTCCAAGCTGTAAGAATCATGCGTCGATCGTCAGGATTTGTACGTATCGTTTCTATCA 1172568 Query 101985 ACTGTTTTAATTGGTCAACTCCTT 102008 | | ||| | ||| ||||| |||| Sbjct 1172567 AATTTTTCAGTTGATCAACCCCTT 1172544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361124396426051