Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1005 221 1e-52 seq2244 149 7e-31 >seq1005 Length=1646370 Score = 221 bits (244), Expect = 1e-52 Identities = 278/377 (74%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176 |||||||| ||||| | ||||| ||||||||||| ||||| || |||||| ||| | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 ||||| || || || ||||| ||||| | || |||||||||||||||||||| | ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || || ||||| || || || ||||| || || ||||| || | || |||||| | ||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 24297 ---CCGGCGCTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | | |||| | ||||| || || ||||| || |||||||| |||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATG-GCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 ||||||||| | ||| || || || | | ||||| | ||| || | || || || Sbjct 377726 CATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTC 377785 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 ||| || || || ||||| || || || || ||||| ||||| ||||| || || ||||| Sbjct 377786 AATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAA 377845 Query 24473 ACATCTAGCCTC-GGTA 24488 ||| | |||||| |||| Sbjct 377846 ACAGCGAGCCTCAGGTA 377862 >seq2244 Length=477090 Score = 149 bits (164), Expect = 7e-31 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 53938 TGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 53997 ||||||||| ||||||||| ||||||||| ||| | | || || |||||||||| ||| Sbjct 404239 TGTATACAAAGCTTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGG 404298 Query 53998 ACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCC 54056 |||||| | |||||||||||||| | ||| || || | ||| || ||||||||||||| Sbjct 404299 ACACATAAGAGACCACTCTCCGTC-TGATTCAACGCGCTGCATGAAAAGATCAGGAATCC 404357 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 54116 ||||||| ||| | || | | | | || || ||||| ||||||||||| |||| Sbjct 404358 AAAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGAT 404417 Query 54117 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176 | || || | | | ||| |||||||| ||||| | ||| || | | | |||| || | Sbjct 404418 CAAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGCAAAAGCTCCTGGAC 404477 Query 54177 G 54177 | Sbjct 404478 G 404478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 53435 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 53494 |||||||| ||||||||||| |||||||| || | ||||||||| ||| ||||| | Sbjct 403526 TCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCG 403585 Query 53495 CTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 53554 |||||||| ||||| | || ||||| || || || || |||||||| ||||| || Sbjct 403586 CTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCT 403645 Query 53555 ATAGGTCTATG 53565 || || | ||| Sbjct 403646 ATCGGACGATG 403656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838 ||||| ||||||||||| ||||| || || ||||| | ||| || || || |||||||| Sbjct 405376 TTTTTAGTTTCTTTGTGAAGATTCGAAACAGCTATGCGAGCAGCCAGGATTGCATAATCA 405435 Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898 ||||| | ||||| || || || |||| || | ||| | || | ||| || ||| Sbjct 405436 GGATGCTTAGTAGTCATTGTAGCAGCAGTTTCTGCAGCAAGATTATCAAGTTCAACAGTT 405495 Query 54899 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 54939 || || ||| ||| | || | ||||| ||||||| ||| Sbjct 405496 GTCACACCAGGATAGAGGCCATTTATAACTTTCATAGTTAT 405536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| | ||| || || ||||| || || ||||| || ||||| || | Sbjct 403966 ATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCCAAATTCTGCTGATTTGATTTGCGG 404025 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTAT 53874 ||||| ||||| ||||| || ||| | || || || ||||||||||||||||| || Sbjct 404026 TTACATGCATCTTTATATAGGATGTACGGAGTTCCCGTTTCAATCTGGGATTCGAT 404081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593507852802480