Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1253 113 5e-20 seq1005 100 3e-16 seq2866 84.2 2e-11 >seq1253 Length=553177 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | ||||| |||||||| || |||| || ||| | | Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | || | || |||| ||||| ||||| ||||| | || || Sbjct 470038 GATACCATAGAAAACG-TAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCA 470096 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||| |||| || | ||| || | |||||||| Sbjct 470097 GCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAA 470156 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||||||| | || ||||||| ||| Sbjct 470157 CATTCAGAAGGAGTCTACTTTGCATCTGGTG 470187 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || || ||||| ||||| |||| || ||| | | Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||||| | || || || || || || | |||||| Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| ||||| || || | || || || ||||| ||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAAC 470385 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || || ||| |||| || || Sbjct 470386 ATTCAAAAAGAATCTACCCTTCATTTAGTTTTACG 470420 >seq1005 Length=1646370 Score = 100 bits (110), Expect = 3e-16 Identities = 252/381 (66%), Gaps = 4/381 (1%) Strand=Plus/Minus Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 |||| | ||||| || || ||||| || || || || |||||||| || | ||||| | Sbjct 377865 AGGTACCTGAGGCTCGCTGTTTCTATGGTTTCCAAATAGCCATGGAAAATATCCACTCAG 377806 Query 116889 AAATGTATTCGACCC--TCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTT 116946 | ||||| | || | || || || ||| | ||| | || | | | | Sbjct 377805 AGATGTA--CAGCCTGTTAATTGAAACCTACATCAAGGATTCTGCTGAAAGGATGAAACT 377748 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 || ||||| | ||||| ||||| || || ||||||| || ||||| || | || Sbjct 377747 TTTCAACGCTGTTGAGACAATGCCTTGTGTTGCGAAGAAGGCTGACTGGGCCATGAGATG 377688 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | |||||| || | | | | || | | || || || || || || || || Sbjct 377687 GATTGGTAACAGAGATGCACCTTACAGTGAAAGAATTGTAGCTTTTGCTGCTGTGGAAGG 377628 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | | || || || || || || || ||||||||||| || || || || | ||||| Sbjct 377627 CATATTTTTCTCTGGTTCCTTTGCTGCAATATTTTGGCTTAAAAAGCGAGGTTTGATGCC 377568 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 || ||||| ||| ||||| || || || || || || |||||||| ||||| ||||| Sbjct 377567 AGGACTGACATTCTCGAACGAACTGATTTCTAGAGATGAAGGTCTGCACTGCGATTTTGC 377508 Query 117187 CTGTTTGCTGTTCAAGCATTT 117207 || | ||||||| ||||| Sbjct 377507 ATGCGTTATGTTCAAACATTT 377487 >seq2866 Length=178446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | ||||| || ||||||||| | || || || | Sbjct 176850 AAAATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAGCCT 176791 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| | |||| ||||| | ||||| || || || || | ||| Sbjct 176790 TCTGATACCATCGAAAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATTCCTCCCGAC 176731 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| | || | || || ||||||||||| |||| ||||| | || ||| Sbjct 176730 CAGCAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGACGGACGCACTTTATCTGATTAC 176671 Query 40867 AACATCCAGAA 40877 ||||| ||||| Sbjct 176670 AACATTCAGAA 176660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515033714647760