Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2190 98.7 7e-16 >seq2190 Length=2111488 Score = 98.7 bits (108), Expect = 7e-16 Identities = 180/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 ||||||| || || ||||| || || | | ||||||||| || |||||||| || || | Sbjct 1172801 CAGTGACGTGAGCTATCATGCATGTCAGCAAAGAATAGCTGGCTATGTTAAAGGGAACAC 1172742 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 ||| ||||||||||| ||||||||||| | || || || || | |||| |||| Sbjct 1172741 CTAAACCCATATCAGCAGATCTTTGATACATTTGGCAAGACAGTTCACCATTTGCTACAT 1172682 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCC 97294 | ||||| ||| ||| || || || ||||||||| ||| | | ||||| Sbjct 1172681 AGAACTGGGCCAAGCAATGGCACGGTGGTAACGCCATTAGTGGTAATGCCGTTGGATTCC 1172622 Query 97295 AAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCT 97354 |||| | | ||| | || |||| || ||||| |||| || | || | | | Sbjct 1172621 AAGCTGTAAGAATCATGCGTCGATCGTCAGGATTTGTACGTATCGTTTCTATCAAATTTT 1172562 Query 97355 TTAATTGATCAACGCCTTCTCCAC 97378 | | ||||||||| |||| |||| Sbjct 1172561 TCAGTTGATCAACCCCTTGACCAC 1172538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346662274589570