Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1253 120 5e-22 seq1952 116 6e-21 seq15804 89.7 8e-13 seq16310 86.0 9e-12 seq2190 84.2 3e-11 >seq1253 Length=553177 Score = 120 bits (132), Expect = 5e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||| | || |||||||| || ||| | ||| |||| | Sbjct 467956 AATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCTTC 468015 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || ||||||||||| |||||||| ||||||||||| Sbjct 468016 TGACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCA 468075 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || || || | |||||| | || || || ||||| || Sbjct 468076 GCAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTACAA 468135 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || || || ||||||||| | ||||||||| Sbjct 468136 CATCCAGAAGGAATCAACTCTCCATTTGGTT 468166 Score = 113 bits (124), Expect = 7e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || |||||||| || | || ||||| | Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || ||||| |||||||| |||||||| || || || || Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || || || || | |||||| |||| || | ||| ||||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACGCTTTCAGACTATAAC 470385 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAA 124773 |||||||||||||| || | ||||| ||||||||| | || || || ||| ||| Sbjct 470386 ATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGAATTTAAA 470440 Score = 109 bits (120), Expect = 8e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || |||| || |||||||| || | ||| |||| || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||||||||||| || ||||| || || || ||||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| || || || ||| |||| || || |||||||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| || ||| | || || ||| ||||| | || || || || ||| || Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCACTTAGTTCTACGTCTCCGCGGCGGAATGCAAATTT 468797 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| ||||| || ||||| | ||||||||||| ||||| ||||| || ||| | || Sbjct 469456 AGGTATCCCACCCGACCAACAGCGACTTATTTTTGCTGGAAAGCAATTGGAAGATGGACG 469515 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||| || || || |||||||| ||||| || || |||||||||| || ||| | || Sbjct 469516 AACGCTATCCGACTACAATATTCAGAAAGAGTCTACACTGCATTTGGTATTGCGTCTGCG 469575 Query 124760 AGGTGGTAT 124768 ||| ||||| Sbjct 469576 AGGAGGTAT 469584 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| || ||| | || ||||| || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || ||||| || ||||| || || || ||||| ||||| ||||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAG 470097 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||| || || || ||| | || || || || || || Sbjct 470098 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAAC 470157 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || ||||||||| |||| | || | ||||||||||| Sbjct 470158 ATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCGACTCCGAGGTGGTAT 470207 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || ||||| ||| | ||||| || || || || || |||||||| | || Sbjct 469851 AGGTATTCCGCCCGATCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTAGAGGATGGACG 469910 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || || |||||||| ||||| ||||| || || | || |||||| ||||| | || Sbjct 469911 TACGTTGTCGGATTATAACATTCAGAAAGAGTCCACCCTTCACTTGGTTCTACGTCTTCG 469970 Query 124760 AGGTGGTAT 124768 ||||||||| Sbjct 469971 AGGTGGTAT 469979 >seq1952 Length=5232 Score = 116 bits (128), Expect = 6e-21 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 202758 CAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTG 202817 ||||||||||||| ||| ||| |||| || |||| || | ||| || || || | Sbjct 544 CAACATCAAATTTGCGTTGACAGCCTTTGTAGTTCATGTAGCGAATCTTTCCGAAAACAT 485 Query 202818 GTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATC 202877 || || ||||| | | |||||||||||||| || ||||||||||| |||||||| | Sbjct 484 CTCGTTGCTTCCAGCCCATGTCATGAATACCACAGATGGACCACATACAGCCAACATAAC 425 Query 202878 CATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATG 202937 || | || || | |||||||| | ||| |||| || | || | | Sbjct 424 CACTAGGGTCTCTTCCATCTAAACTGTATCTATCGTTCAGATATATAGCAAGTCTTAGAG 365 Query 202938 CTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCT 202989 ||||||| || | | |||||||| || |||||||| ||||| |||||||| Sbjct 364 CTTCTTCGGGCGTCTCCGTCCATTCCAAAATTTTTTTGGCCCAGTACATTCT 313 >seq15804 Length=1078 Score = 89.7 bits (98), Expect = 8e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| ||||||||||| || || | || ||||| || ||||| || |||||| |||| Sbjct 626 AGGTATCCCACCTGATCAGCAGAGATTAATCTTTGCCGGCAAACAGTTGGAGGATGGTCG 567 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || || ||||| ||||| ||||| ||||| || || |||||||| | || | || Sbjct 566 TACTTTGTCCGATTACAATATCCAAAAGGAATCCACCTTACATTTGGTGCTCCGCCTTCG 507 Query 124760 AGGTGGT 124766 |||||| Sbjct 506 TGGTGGT 500 >seq16310 Length=633 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| ||||| ||||| || | ||||||||||| ||||| ||| |||| || | || Sbjct 549 AGGTATCCCACCCGATCAGCAGCGTCTTATTTTTGCTGGAAAGCAACTAGAAGACGGGCG 490 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 || | || ||||| || |||||||| || ||| | |||||||| || ||| |||| Sbjct 489 TACGCTGTCTGACTATAACATCCAAAAAGAGTCTACTCTTCATTTGGTATTGCGTCTACG 430 Query 124760 AGGTGGTATTAAAAATT 124776 || || || ||| || Sbjct 429 GGGAGGCATGCAAATTT 413 >seq2190 Length=2111488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/145 (73%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 || || ||||| | |||| ||| ||| || || | ||||| || |||||||||||| Sbjct 1172793 TGAGCTATCATGCATGTCAGCAAAGAATAGCTGGCTATGTTAAAGGGAACACCTAAACCC 1172734 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAAT 205569 |||||||| ||||||||||||||||| || | || || | ||| ||||| || Sbjct 1172733 ATATCAGCAGATCTTTGATACATTTGGCAAGACAG---TTCACCATTTGCTACATAGAAC 1172677 Query 205570 TGTACAAAACAATGACAAGGTGGTA 205594 || | || ||||| || ||||||| Sbjct 1172676 TGGGCCAAGCAATGGCACGGTGGTA 1172652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755184026396800