Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1253 152 4e-32 seq2866 100 2e-16 seq16310 89.7 4e-13 >seq1253 Length=553177 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | || ||||||||||||||||| |||||| || ||| || ||| || Sbjct 468768 ACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCC 468709 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| ||||| || ||||||||||||||||||| || || ||||| ||||||||| | Sbjct 468708 AACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 468649 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||||| || || | ||||| ||| |||| ||| ||||| | ||| | ||||| Sbjct 468648 ATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTC 468589 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | |||||| || || |||||||| Sbjct 468588 CCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || | ||||| || | |||||||| || ||||||||||| || Sbjct 470206 TACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAG 470147 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || ||| ||| || | ||| ||||| || ||||||||||||||||||| || | Sbjct 470146 ACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTG 470087 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||||||||| ||| || ||| || | ||| | ||| |||| || | || Sbjct 470086 GGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGT-TCA 470028 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || | ||||| || |||| ||||| || || || ||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || || || || || |||||||||||| || ||| || |||||| Sbjct 468165 ACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTCA 468106 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| | ||| |||||||| || || || || ||||| ||| | Sbjct 468105 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGA 468046 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | || | ||||| | ||| ||||| | || | |||||| Sbjct 468045 ATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTG 467986 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| |||||||| Sbjct 467985 CCAGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||||||||| || || | || || |||||| ||||| || || Sbjct 470402 GTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCAAGCTGCTTGCCG 470343 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||| ||||| |||||||| || || ||||| ||| ||||| ||| Sbjct 470342 GCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGGATTTTAGCCTTA 470283 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | || || |||| || | ||||| || |||| || Sbjct 470282 ACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTCCCAGTCAACGTC 470223 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 470222 TTGACAAAGATCTGCAT 470206 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| |||||||| ||||| || || || |||||| Sbjct 469958 ACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGACAACGTACGTCCATCCTCT 469899 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| ||||||||||| || || || Sbjct 469898 AGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGGAATACC 469852 >seq2866 Length=178446 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| |||||||||||||| | |||||| || || |||||||| ||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | ||| ||||| |||||||| || || ||||||||| ||||| ||||| | || Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | ||| ||||| | ||| | || || || || | || || || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 118729 AAATCTGCAT 118738 |||||||||| Sbjct 176838 AAATCTGCAT 176847 >seq16310 Length=633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||||||||| || | ||||||||||| ||||||||||| ||| Sbjct 20 TACCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGG 79 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || ||| ||| || | || |||||||| | || ||||||||||| ||||| | Sbjct 80 ACAACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGGTG 139 Query 118630 GTATGCC 118636 | || || Sbjct 140 GGATCCC 146 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| |||| | ||| ||||| || | |||||||||||||| ||||| || || | Sbjct 424 CCTCCCCGTAGACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGAC 483 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || ||| || || || || |||||||| | || ||||||||||||||||| || Sbjct 484 AGCGTACGCCCGTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGGG 543 Query 118632 ATGCC 118636 || || Sbjct 544 ATACC 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433678120242292