Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1764 96.9 4e-15 seq4782 95.1 1e-14 seq3275 95.1 1e-14 seq1253 95.1 1e-14 seq56 93.3 5e-14 seq5014 91.5 2e-13 seq1005 91.5 2e-13 seq16779 89.7 6e-13 seq2443 89.7 6e-13 seq16310 82.4 9e-11 >seq1764 Length=448002 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 || |||||||| | ||| || | |||||| |||||| ||||||||||||||||||||| Sbjct 177814 ATAAAAAATTTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGG 177873 Query 60113 ATACTCACCACTATACTACCGAGGA 60137 ||||| |||||||||||| |||||| Sbjct 177874 ATACTGACCACTATACTATCGAGGA 177898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 254562 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 254503 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 254502 TACTATCGAGGAT 254490 >seq4782 Length=950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/98 (83%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 60051 TTTATGAAAAA---TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG 60107 ||| |||||| ||| |||| || | |||||| |||||| |||||||||||||||||| Sbjct 729 TTTCTGAAAATACTTTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGG 670 Query 60108 CGGACATACTCACCACTATACTACCGAGGATTG-AATA 60144 ||| ||||| |||||||||||| |||||| || |||| Sbjct 669 CGGGGATACTGACCACTATACTATCGAGGACTGTAATA 632 >seq3275 Length=417686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| | ||||| || | |||||| |||||| ||||||||||||||||||||| ||| Sbjct 348851 GAAAATTAGTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 348910 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 348911 CTGACCACTATACTATCGAGGA 348932 >seq1253 Length=553177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||||| || |||||| ||||| ||||| |||| || || ||| | || || Sbjct 470187 CACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTC 470128 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | |||||| || || || ||||| |||||||| || | || | | |||||||||| | Sbjct 470127 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCC-T 470069 Query 43094 GATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | || ||| | | || || | ||| || |||| || ||||||| Sbjct 470068 GAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTT 470009 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| | || || || ||||||||||| Sbjct 470008 TCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||||| |||||||||| ||| ||| || ||||||||||| || | Sbjct 469581 CCTCCTCGCAGACGCAATACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGAT 469522 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 || || || | || || | ||||| ||||| || || |||||||| ||||||| Sbjct 469521 AGCGTTCGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGG 469467 >seq56 Length=80015 Score = 93.3 bits (102), Expect = 5e-14 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 64464 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 64523 Query 60126 TACTACCGAGGA-TTGAATATATAA 60149 ||||| |||||| |||| | ||||| Sbjct 64524 TACTATCGAGGACTTGAGT-TATAA 64547 >seq5014 Length=477 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||||||||||| |||||| |||||||||||||||||||| | ||||| |||||| Sbjct 462 CTCCCCGGCAGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGTAGATACT-GCCACTA 404 Query 60126 TACTACCGAGGA 60137 || ||||||||| Sbjct 403 TATTACCGAGGA 392 >seq1005 Length=1646370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||| |||| | ||| || | |||||| |||||| ||||||||||||||||||||| ||| Sbjct 1624862 AAACATTTGCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1624921 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 1624922 CTGACCACTATACTATCGAGGA 1624943 >seq16779 Length=324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| ||| || |||||||||||||| || || ||||| Sbjct 260 TTCTCCCCGGCGGGGAATTGAACCCCGGTATCTCGCGTGACAGGCGGGGATTCTGACCAC 201 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 200 TATACTACCGAGGA 187 >seq2443 Length=88552 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 71698 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 71639 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 71638 TACTATCGAGGA 71627 >seq16310 Length=633 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||||||||| || ||| || ||||| ||||| || | | Sbjct 22 CCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGAC 81 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | || ||| | || || | ||||| ||||| || || || ||||||||||||| Sbjct 82 AACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGG 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571611738516280