Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2866 89.7 4e-13 >seq2866 Length=178446 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATAT 45207 |||||||||||||| || | | | | ||| |||| ||||| ||||| || || || || Sbjct 176660 TTCTGAATGTTGTAATCAGATAAAGT-GCGTCCGTCTTCCAGCTGTTTACCAGCAAAAAT 176718 Query 45208 CAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGC 45267 ||| || || ||||||||||| | ||| |||||||| ||||| |||||| | Sbjct 176719 CAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTTC 176778 Query 45268 CACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | | | || | ||| ||||| | ||| || ||||| ||||| | ||||| || || Sbjct 176779 GATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGAA 176838 Query 45328 GATTTGCATGTTG 45340 || ||||| ||| Sbjct 176839 AATCTGCATTTTG 176851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394936523789821