Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1253 84.2 2e-11 >seq1253 Length=553177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || || || |||||||| || || | || || || | Sbjct 467957 ATGCAGATCTTTGTCAAGACATTGACTGGCAAAACCATCACTCTTGAGGTTGAGCCTTCT 468016 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | |||||||| || ||| | || ||||| | || ||| ||| Sbjct 468017 GACACTATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCAG 468076 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| ||||| || || || ||| | ||| || |||||||| | Sbjct 468077 CAACGTTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTTTGTCCGATTACAAC 468136 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||| || | || || ||||| || Sbjct 468137 ATCCAGAAGGAATCAACTCTCCATTTGGT 468165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418157170197920