Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1253 132 4e-26 seq2866 100 3e-16 seq2244 86.0 6e-12 seq1005 84.2 2e-11 >seq1253 Length=553177 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||| | || || ||||| || ||| | || ||||| || || Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAGCCATCG 468619 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| ||||| | ||| |||||||||||| | || || || ||| Sbjct 468620 GATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 468679 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||||||||||| | ||| || |||||||||| Sbjct 468680 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAAC 468739 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 ||||||||||| ||||||||||| Sbjct 468740 ATTCAAAAAGAGTCGACTCTTCA 468762 Score = 113 bits (124), Expect = 4e-20 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || ||||| ||||| |||| |||||||| || Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| || |||||||| | || ||||||||| Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTC-TATGACTATGAGCGATTAT 31369 || ||||| || ||||| ||||| ||| | || || || || | || | | || ||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTACG-CTTTCA--GACTAT 470382 Query 31370 AACATTCAAAAAGAATCGACTCTTCAT 31396 ||||||||||||||||| || |||||| Sbjct 470383 AACATTCAAAAAGAATCTACCCTTCAT 470409 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || |||| || ||||| || || |||| |||||||| || Sbjct 469978 ATGCAAATCTTCGTGAAAACCTTGACGGGGAAAACCATTACTCTCGAAGTTGAACCATCG 470037 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | || ||||||||| || | || || || ||| Sbjct 470038 GATACCATAGAAAACGTAAAAGCTAAGATTCAGGACAAGGAGGGTATCCCACCAGATCAG 470097 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || || || ||||||||||| || || || || ||| Sbjct 470098 CAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGTACGTTGTCTGACTACAAC 470157 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||| | |||||||| ||| |||| | || |||| Sbjct 470158 ATTCAGAAGGAGTCTACTTTGCATCTGGTGCTTCGACTCCGAGGTGGTA 470206 >seq2866 Length=178446 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| | || || || || |||||| | || ||||| || Sbjct 176850 AAAATGCAGATTTTCGTTAAGACATTAACGGGTAAGACCATCACCCTTGAGGTTGAGCCT 176791 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || || ||| ||||||||||| | || |||||| Sbjct 176790 TCTGATACCATCGAAAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATTCCTCCCGAC 176731 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||| | || || ||||| |||||| |||||||| ||| | ||||| Sbjct 176730 CAGCAACGTTTGATTTTTGCTGGTAAACAGCTGGAAGACGGACGCACTTTATCTGATTAC 176671 Query 31370 AACATTCAAAAAG 31382 |||||||| |||| Sbjct 176670 AACATTCAGAAAG 176658 >seq2244 Length=477090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/154 (74%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 22181 TTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACA 22240 ||||| || || || || || || ||||||||||||||| |||| | |||| | Sbjct 402736 TTCCAGGCATAGAAGTGCATTGAAGTCAATTTTCCATAATTCGGTTCTGCAATGTGTATG 402795 Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA 22300 || || |||||||| |||||||| || || || ||||| || ||||| || || |||| | Sbjct 402796 TTCAATGACTGACTTTGATCGATGAAAGCACCACGATCAGCAGCCATCTTAAT-AATG-A 402853 Query 22301 CGC---ATCGACATTTCCCATACGGTCTTGTACA 22331 ||| | || ||||||||||| || || |||| Sbjct 402854 CGCGCTGTGGA-ATTTCCCATACTGTTTTATACA 402886 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 ||||||| ||||| || || || | |||||| || || |||||||||||||| ||| | Sbjct 403955 TGTACTCAACAATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCCAAATTCTGCTGAT 404014 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 | ||| || || || | ||| || || || |||||||| || ||||| || | ||| | Sbjct 404015 TTGATTTGCGGTTACATGCATCTTTATATAGGATGTACGGAGTTCCCGTTTCAATCTGGG 404074 Query 23184 ACTCGAT 23190 | ||||| Sbjct 404075 ATTCGAT 404081 >seq1005 Length=1646370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 57528 AATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAA 57587 |||||| | ||||||| |||| || || | |||| || |||||| | ||||||||| Sbjct 378226 AATCCCAGCCGATTTGTGTTGTTCCCTATCCAGTATCATGATATTTGGCAAATGTACAAA 378167 Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGG 57636 || || ||||| || |||||||| | |||||||| ||||| || |||| Sbjct 378166 AAAGCTGAAGCCTCATTTTGGACTGCTGAAGAAGTTGACCTTTCCAAGG 378118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445605918523920