Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1005 93.3 8e-14 >seq1005 Length=1646370 Score = 93.3 bits (102), Expect = 8e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 || || | |||| | || | ||||| || | | | |||||| ||| ||||| ||||| Sbjct 377394 CCTTCCAAAGAACGTGTTGTCGAAATCGTAAATAACGCCGTCAAAATCGAACAGGAATTC 377335 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 ||||| | | | ||||| ||| || | | ||||||||||||| | | ||| | |||||| Sbjct 377334 CTCACCGATGCACTGCCCGTTGAAATGATTGGAATGAACTGCAGGCTAATGCGTCAGTAC 377275 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGA 102253 || |||||||| || ||| || ||| ||||| | ||| Sbjct 377274 ATCGAATTTGTTGCCGATCGTCTTTTGCTTGAACTTGGA 377236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989218830824955