Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq8007 205 3e-48 >seq8007 Length=747 Score = 205 bits (226), Expect = 3e-48 Identities = 233/311 (75%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 33656 TTGAGACCCCCTGTCGGAATGATGAATCAAAGTCC--CGTCCTCGCCCGGTTGGCGGGCG 33713 ||| || || | ||| || ||||| | || | || |||| |||| ||| | |||| || Sbjct 343 TTGCGAGCCGCGGTCTGAGTGATGCACCA--GCCCATCGTCTTCGCTCGGCTTGCGGTCG 400 Query 33714 TACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGC 33773 || ||||| || || || || || || || || || ||| |||||| ||| ||| Sbjct 401 TAGAGCGCCTGCTCCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAGCTGCTCTGGCGC 460 Query 33774 CAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGC 33833 ||||| || || || ||| |||||||||||| ||||| ||||| || | |||||||||| Sbjct 461 CAGCCCACGATGCGCCGGCTGAACACGTCGATGACGAACGCCACATAGACCCAGCCTTGC 520 Query 33834 CATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAAC 33893 || ||||| ||||| || |||||||| ||||||||||| ||||| || || || |||| Sbjct 521 CAGGTCGAAACATAGGTGAAATCCGAGACCCAGAGCTGGTTCGGCCGCTCGGCACGGAAC 580 Query 33894 TGCCGGTTGACTCGGTCCAGCGGGCGCGGCGCGGTCACATCGGTAATCGTCGTGCGAACA 33953 ||||| ||||| ||||||||||||| ||||| | ||||| ||| || || || ||| Sbjct 581 TGCCGATTGACGCGGTCCAGCGGGCATGGCGCCTTGGGATCGGGAATGGTGGTCCGCACA 640 Query 33954 CGCTTACCGCG 33964 ||| ||||| Sbjct 641 GCCTTGCCGCG 651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170613628149270