Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1005 230 2e-55 seq2244 113 4e-20 >seq1005 Length=1646370 Score = 230 bits (254), Expect = 2e-55 Identities = 274/371 (74%), Gaps = 3/371 (1%) Strand=Plus/Plus Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGT 11671 |||||||| ||||| | || |||||||| || || | |||||| |||||| || ||| Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 11672 TCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA 11731 || || || ||||| | ||| |||||||| ||||| ||||| | ||||||||| |||||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 11732 AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA- 11790 || |||||||| || ||||| || |||||||| ||||| ||||| | |||||| | || Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 11791 --TACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC 11848 | | | || || |||||| | ||||||| ||||| ||||| || || | Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGC 377726 Query 11849 ATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCT 11908 ||||| || | |||||| || | | ||| |||| | ||| | | || || || Sbjct 377727 ATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTCA 377786 Query 11909 ATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAA 11968 ||||| | || ||||| ||||| || ||||||||||| |||||||| || ||||||||| Sbjct 377787 ATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAAA 377846 Query 11969 CATCGTGCCTC 11979 || || ||||| Sbjct 377847 CAGCGAGCCTC 377857 >seq2244 Length=477090 Score = 113 bits (124), Expect = 4e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 37419 AGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTC 37478 |||||||| |||| | ||||| || |||||||||||||| |||||| | || ||||| Sbjct 403522 AGATTCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTC 403581 Query 37479 TTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGAT 37538 ||||||||| || | ||||| || || ||||| |||||||||| || ||||| || || Sbjct 403582 TTCGCTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAAT 403641 Query 37539 ACCTATGGGTCTATG 37553 ||||| || | ||| Sbjct 403642 TCCTATCGGACGATG 403656 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 37951 CCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCT 38010 ||||| ||||| ||| || |||||||| |||||||| |||||||| ||| | ||| Sbjct 404264 CCCCAAGCATCGGCTAAACCCGGACATTCATTCGGACACATAAGAGACCACTCTCCGTCT 404323 Query 38011 TTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTT 38070 ||| ||||| | ||| || | |||||| | ||| | || ||| || || | Sbjct 404324 GATTCAACGCGCTGCATGAAAAGATCAGGAATCCAAAGAGCGTAAAACAAGTCACGTGCA 404383 Query 38071 CTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGC 38130 | | ||||| || || ||||||| ||| ||||| || |||| ||| | ||| Sbjct 404384 CGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGATCAAGAAATTCAAATACATCCGAATGC 404443 Query 38131 CATGGTTCTATATAAATCGACATTGCTCCTGG 38162 |||||||||| ||||| | | |||||||| Sbjct 404444 CATGGTTCTAGGTAAATTGCAAAAGCTCCTGG 404475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468356125215440