Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1253 145 8e-30 seq2866 113 4e-20 seq16310 95.1 1e-14 >seq1253 Length=553177 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||||||||||| || |||||||||||||||||||||||| | Sbjct 468786 CCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGAC 468727 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||| || || ||| |||| ||||| |||||||| || || Sbjct 468726 AAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 468667 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||||| || | | ||| | || || | ||||| || Sbjct 468666 ATGCCTTCCTTGTC-TTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAAC 468608 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | || || ||||| || ||||| ||||| || |||||| Sbjct 468607 CTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCATA 468559 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| |||||||| |||| ||||| ||||||||||||||||| || | Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTC--TG 470375 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | ||| || || ||||| || || || |||||||||||||||| ||||||| Sbjct 470374 AAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAG 470315 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| || || |||||| || | | ||| | |||||| | || || | Sbjct 470314 GAATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAA 470255 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || |||||||| || || || || |||||| Sbjct 470254 CTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCATA 470205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| ||||||| || |||||||| |||||||||||||| | Sbjct 469976 CCACCTCGAAGACGTAGAACCAAGTGAAGGGTGGACTCTTTCTGAATGTTATAATCCGAC 469917 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || ||||| || ||||| |||| ||||||||||||||||| || Sbjct 469916 AACGTACGTCCA-TCCTCTAGCTGCTTGCCAGCGAAGATAAGACGTTGCTGATCGGGCGG 469858 Query 139657 TATGCCT 139663 || ||| Sbjct 469857 AATACCT 469851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||| || || | || || || || || ||||| |||||| || || | Sbjct 468171 CGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCA 468112 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||| |||||||||||| || || || ||||| || Sbjct 468111 TCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTA 468052 Query 139670 TCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || | ||||| | ||||| ||||||| || | Sbjct 468051 TC-TTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGAT 467993 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| || || || || || ||||| Sbjct 467992 GGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 >seq2866 Length=178446 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 |||| |||||||| ||||| | |||| |||||| ||||||||||||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTT 139694 ||| ||||||||| |||||||| || ||||| ||||| |||||| || | | || Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 139695 CCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 | | || || | ||||| ||||||| ||| | ||||| || || || || || |||| Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 139755 ATATTTGCAT 139764 | || ||||| Sbjct 176838 AAATCTGCAT 176847 >seq16310 Length=633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| |||||| || || |||| |||||||||||||| |||||||| || Sbjct 423 GCCTCCCCGTAGACGCAATACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGA 482 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | | |||||| || || || |||||| | || ||||| ||||||||||| || Sbjct 483 CAGCGTACGCCCGTCTTCTAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGG 542 Query 139657 TATGCCT 139663 || ||| Sbjct 543 GATACCT 549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495885410759200