Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1005 208 1e-48 seq2244 140 5e-28 >seq1005 Length=1646370 Score = 208 bits (230), Expect = 1e-48 Identities = 276/377 (73%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 49942 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 50001 |||||||| ||||| | ||||| ||||||||||||||||| || |||||| ||| ||| Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 ||||| || || || ||||| ||||| | || |||||||||||||||||||| | ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || || ||||| || || || ||||| || || ||||| || |||| ||| || | ||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 50122 -CTG--GCGCTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 || | |||| | ||||| || || ||||| || |||||||| |||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATG-GCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 50178 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 50237 ||| || || | || || || || | | ||||| | ||| || | || || || Sbjct 377726 CATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTC 377785 Query 50238 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || || || || ||||| || || || || ||||| ||||| || || || || ||||| Sbjct 377786 AATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAA 377845 Query 50298 ACATCTAGCCTC-GGTA 50313 ||| | |||||| |||| Sbjct 377846 ACAGCGAGCCTCAGGTA 377862 >seq2244 Length=477090 Score = 140 bits (154), Expect = 5e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 79848 TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGG 79907 |||||| || ||| ||||| ||||||||| ||||| |||| || |||||||| | || Sbjct 404239 TGTATACAAAGCTTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGG 404298 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967 |||||| | ||||||||||| || | || || | ||| || |||||||||||||| Sbjct 404299 ACACATAAGAGACCACTCTCCGTCTGATTCAACGCGCTGCATGAAAAGATCAGGAATCCA 404358 Query 79968 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 80027 |||||| ||| | || | | | | ||| || ||||| ||||||||||| ||||| Sbjct 404359 AAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGATC 404418 Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 || || | | | ||| |||||||| ||||| | ||| || || | | |||| || || Sbjct 404419 AAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGCAAAAGCTCCTGGACG 404478 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 79345 TCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGG 79404 |||||||| ||||||||||| ||||||||||| | |||||| || ||| |||||| | Sbjct 403526 TCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCG 403585 Query 79405 CTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464 |||||||| ||||| | || ||||| || || || || |||||||| ||||| || Sbjct 403586 CTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCT 403645 Query 79465 ATAGGTCTATG 79475 || || | ||| Sbjct 403646 ATCGGACGATG 403656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718010214253640