Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1005 203 3e-47 >seq1005 Length=1646370 Score = 203 bits (224), Expect = 3e-47 Identities = 272/373 (73%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 |||||| || || | || |||||||| || || || || ||||||||| ||| ||||| Sbjct 377489 ATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTC 377548 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 ||| || ||||| | |||||||||||| ||||| ||||| | |||||||||||||||||| Sbjct 377549 GTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAA 377608 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || || || ||||| || || || |||||||| |||| | || ||| | | | Sbjct 377609 GGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAAGG 377668 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095 ||| | | |||| |||||| | | ||||| |||| || || || | || ||| Sbjct 377669 TGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGCAT 377728 Query 14096 TGTTTCAATAGCATTAAATAAATAT--TCCTTCTCTTTAG--TACTTGAAATGTATGTAT 14151 ||| |||| ||| || || || | | ||||| || || | |||| ||||| || | Sbjct 377729 TGTCTCAACAGCGTTGAA-AAGTTTCATCCTT-TCAGCAGAATCCTTG--ATGTAGGTTT 377784 Query 14152 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAA 14211 |||| | | ||| ||||| || ||||| || |||||||| ||||| || |||||||| | Sbjct 377785 CAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGA 377844 Query 14212 AGCATCTAGCTTC 14224 | || | ||| || Sbjct 377845 AACAGCGAGCCTC 377857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479555291923400