Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq15804 96.9 3e-15 seq16310 86.0 5e-12 seq1253 86.0 5e-12 >seq15804 Length=1078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | ||| |||||||| | ||||||||||||| Sbjct 501 CCACCACGAAGGCGGAGCACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAATCGGAC 560 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||| |||||||||||||| || |||| ||| ||||| | || Sbjct 561 AAAGTACGACCATCCTCCAACTGTTTGCCGGCAAAGATTAATCTCTGCTGATCAGGTGGG 620 Query 43003 ACACCT 43008 | |||| Sbjct 621 ATACCT 626 >seq16310 Length=633 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | ||||||||||| | || ||| || || | ||||| |||||| Sbjct 22 CCTCCACGCAGACGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGAC 81 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGG 42997 || ||||| | || |||||||| || || |||||||||| ||||| || |||| Sbjct 82 AACGTACGCCCATCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGG 136 >seq1253 Length=553177 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||||| ||| ||||| || | |||||||||||||| ||||| | || || Sbjct 468165 ACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTCA 468106 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||| ||||| ||||| || || ||||| | || | |||||| || || Sbjct 468105 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTGA 468046 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | || || | ||| ||||| || ||| || || | || || ||||| Sbjct 468045 ATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTTG 467986 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | || || ||||| || |||||||| Sbjct 467985 CCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381235734622458