Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1005 212 8e-50 seq2244 158 2e-33 >seq1005 Length=1646370 Score = 212 bits (234), Expect = 8e-50 Identities = 280/385 (73%), Gaps = 5/385 (1%) Strand=Plus/Plus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 |||||||| ||||| | ||||| ||||||||||||||||| ||||||||| ||| | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 ||||| || || || ||||| ||||| | || |||||||||||||||||||| | ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || || ||||| || || || ||||| || || ||||| || | || ||| || | ||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 42227 CCGGCA---CTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 ||| |||| | ||||| || || ||||| || |||||||| |||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATG-GCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 ||| || || | || || || || | | ||||| | ||| || | || || || Sbjct 377726 CATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTC 377785 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || || || ||||| ||||| || || ||||| ||||| || || || || ||||| Sbjct 377786 AATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAA 377845 Query 42403 ACATCTGGCCTCGGTAACCTGTACT 42427 ||| | ||||| | |||| |||| Sbjct 377846 ACAGCGAGCCTCAGGTACCTTTACT 377870 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42560 TCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCA 42619 || |||||||| | ||||||||||| ||||| || ||||| ||||| | ||| |||||| Sbjct 378129 TCAACTTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTGTACATTTGCCAAATATCA 378188 Query 42620 TGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 ||||| || || ||||| | ||||||| | ||||| || Sbjct 378189 TGATACTGGATAGGGAACAACACAAATCGGCTGGGATTAGG 378229 >seq2244 Length=477090 Score = 158 bits (174), Expect = 2e-33 Identities = 181/241 (75%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 71931 TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGG 71990 |||||| || ||| ||||| ||||||||||||| | |||| || |||||||||||||| Sbjct 404239 TGTATACAAAGCTTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGG 404298 Query 71991 ACACATCAATGACCACTCTCCATCATCATT-TACTCGTTTCATAAAGAGATCAGGAATCC 72049 |||||| | ||||||||||| || | ||| || || | ||| || ||||||||||||| Sbjct 404299 ACACATAAGAGACCACTCTCCGTC-TGATTCAACGCGCTGCATGAAAAGATCAGGAATCC 404357 Query 72050 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 72109 ||||||| ||| | || | | | | ||| || ||||| ||||||||||| |||| Sbjct 404358 AAAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGAT 404417 Query 72110 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCC 72169 | || || | | | ||| |||||||| ||||| | ||| || || | | |||| || | Sbjct 404418 CAAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGCAAAAGCTCCTGGAC 404477 Query 72170 G 72170 | Sbjct 404478 G 404478 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGG 71487 |||||||| || |||||||| ||||||||||| | |||||| || ||| ||||| | Sbjct 403526 TCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCG 403585 Query 71488 CTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCG 71547 |||||||| ||||| | || ||||| || || || || |||||||| ||||| || Sbjct 403586 CTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCT 403645 Query 71548 ATAGG 71552 || || Sbjct 403646 ATCGG 403650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670897581498760