Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2190 104 3e-17 seq1005 86.0 9e-12 >seq2190 Length=2111488 Score = 104 bits (114), Expect = 3e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTT 70285 |||||||| | | || | | |||||| |||||||||| || || ||||| ||||| Sbjct 1172621 TGGAATCCAACGGCATTACCACTAATGGCGTTACCACCGTGCCATTGCTTGGCCCAGTTC 1172680 Query 70286 TAC-TCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 || | | | |||| || |||| ||| ||||||||| || ||| || ||||| | Sbjct 1172681 TATGTAGCAA-ATGGTGAACTGTCTTGCCAAATGTATCAAAGATCTGCTGATATGGGTTT 1172739 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 ||||| ||||||||||| || ||||||||| || |||| |||||| |||||| | || Sbjct 1172740 AGGTGTTCCCTTTAACATAGCCAGCTATTCTTTGCTGACATGCATGATAGCTCACGTCAC 1172799 Query 70405 CGGCCTGAA 70413 || || || Sbjct 1172800 TGGTCTAAA 1172808 >seq1005 Length=1646370 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||||||||| |||||| ||||||||||||| ||| | ||||| |||| Sbjct 378207 TGTTCCCTATCCAGTATCATGATATTTGGCAAATGTACAAAAAAGCTGAAGCCTCATTTT 378148 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGG 125085 |||| | ||||| || || || ||||||| Sbjct 378147 GGACTGCTGAAGAAGTTGACCTTTCCAAGG 378118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740792409424760