Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq7706 113 3e-20 seq7643 91.5 1e-13 >seq7706 Length=455 Score = 113 bits (124), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 99366 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 99425 ||||| || || | ||| | |||| |||||| ||||| || | ||| ||||| ||||| Sbjct 111 GAACGCCATGCGGGTGGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGAGGG 170 Query 99426 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 99485 ||||| || || |||| || || ||||| ||||||||||||||||||||||| ||| | Sbjct 171 GCGCTGGGTGGCGAGGATCAGGTGGATGCCCGCCGCACGCGCCTTCTGCGCGATACGGGC 230 Query 99486 AATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCAC 99545 | || ||| || | |||||| | | |||||| | || |||| ||| || || Sbjct 231 ---GATGAGCTCTTCCACCTTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGAC 287 Query 99546 CACTACCACGATGTAGGGGAG 99566 | ||||||||| ||| || Sbjct 288 GATGACCACGATGGTGGGCAG 308 >seq7643 Length=448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 188/276 (68%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 99291 GTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGT 99350 ||||||||| |||| | ||||| || || ||| ||||| ||||| ||| | Sbjct 380 GTCACCCATGCCCAGCAAGGCTTCGGCGCCCATCTGGTCGAGGATGGTGCGGCTGTCGAT 321 Query 99351 GAGGGACGCTG---TGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGT 99407 ||| |||| ||| || |||||||| | || | ||| |||||| ||||| || Sbjct 320 CTTGGA-GCTGACCTGG--AAGGACAGCCGGGTCGGGATATTGGCCTTGATCAGGCCGGT 264 Query 99408 CACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGC 99467 | |||||| || || |||||||| || ||||| | || || ||||||||||| || || Sbjct 263 GATCACATCGACCGAAGGCCGCTGTGTGGCCAGAATCAGGTGGATGCCGGCCGCGCGGGC 204 Query 99468 CTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAG 99527 ||| ||||| | |||| | || | || | | |||||| | | ||||||| || Sbjct 203 CTTTTGCGCCAAGCGGGCGATCAGCTCTTCGATC---TTCTTGCCGACCACCATCATCAG 147 Query 99528 ATCAGCGAGTTCATCCACCACTACCACGATGTAGGG 99563 || || | || || | || || |||||| |||| Sbjct 146 GTCGGCCAACTCGTCGATGACGACGACGATGAAGGG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354518715914586