Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2866 100 2e-16 seq1253 98.7 7e-16 >seq2866 Length=178446 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| || ||||||||||| || | | | ||||||| | ||||| ||||| | | Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 |||||||||| |||||| ||||| ||||| ||||| ||||| ||| ||| ||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | |||||||| | || || || | ||| ||||| ||||| || | || || || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 15354 AAATTTGCATATT 15366 |||| ||||| || Sbjct 176838 AAATCTGCATTTT 176850 >seq1253 Length=553177 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 15151 TAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTC 15210 |||||||||||||||||| || |||||||| ||||| || || || | | | || Sbjct 470418 TAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATC 470359 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 || | || ||||| ||| | |||| |||||| |||||| ||||| ||||| || || Sbjct 470358 CTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATC 470299 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||||| ||| ||| |||| || || || | ||| || || | || || || Sbjct 470298 TTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGT 470239 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || |||| || || ||||| || |||||| Sbjct 470238 TTTCCCAGTCAACGTCTTGACAAAGATCTGCATA 470205 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || |||||||||||| | | | | | || || Sbjct 468166 AACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCATCCTC 468107 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | ||||||||||| || || |||||| ||||| || || Sbjct 468106 AAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTATCTTG 468047 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || || || || | || || || | || |||||||| Sbjct 468046 AATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATGGTTTT 467987 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| || || ||||| || ||||| || Sbjct 467986 GCCAGTCAATGTCTTGACAAAGATCTGCATTTT 467954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362052070686741