Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1253 86.0 5e-12 >seq1253 Length=553177 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| ||||| ||||| || | || || | || || Sbjct 470187 CACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGACAACGTACGCCCATCTTC 470128 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || || ||| | || || | ||||||||| || | ||||| ||||| Sbjct 470127 CAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGGATACCCTCCTTGTCCTG 470068 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || |||||| | | | ||||| || || ||||| ||||||||||| Sbjct 470067 AATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACTTCGAGAGTAATGGTTTT 470008 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| || || |||||||| Sbjct 470007 CCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414427279894594