Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq8007 96.9 1e-15 >seq8007 Length=747 Score = 96.9 bits (106), Expect = 1e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 50178 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTT 50237 |||||||| || || |||||| || || || || ||||| | ||||| | ||||| Sbjct 597 GACCGCGTCAATCGGCAGTTCCGTGCCGAGCGGCCGAACCAGCTCTGGGTCTCGGATTTC 538 Query 50238 ACCTGGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTC-GC 50296 |||| || || ||||| |||| || |||||||||||| |||| || |||||| || Sbjct 537 ACCTATGTTTCGACCTGGCAAGGCTGGGTCTATGTGGCGTTCGTCATCGACGTGTTCAGC 478 Query 50297 CGGATACATCGTGGGATGGCAGGTCTCATCA--TCCATGGAAACAACATTCGTGCTGGAT 50354 ||| ||||||||| |||| | | | || || ||| | || |||||||| || Sbjct 477 CGG-CGCATCGTGGGCTGGC--GCCAGAGCAGCTCGATGCACACCGAGTTCGTGCTCGAC 421 Query 50355 GCACTGGAGCAGGCG 50369 || |||||||||||| Sbjct 420 GCGCTGGAGCAGGCG 406 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 53018 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTT 53077 |||||||| || || |||||| || || || || ||||||| ||||| | ||||| Sbjct 597 GACCGCGTCAATCGGCAGTTCCGTGCCGAGCGGCCGAACCAGCTCTGGGTCTCGGATTTC 538 Query 53078 ACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTT-TGC 53136 || || || || ||||| |||| ||||||||||||||| |||| || ||||| || Sbjct 537 ACCTATGTTTCGACCTGGCAAGGCTGGGTCTATGTGGCGTTCGTCATCGACGTGTTCAGC 478 Query 53137 CGGATACATTGTGGGGTGGCG-GGTCTCATCGTCCATGGAGACGACATTCGTGCTGGATG 53195 ||| ||| ||||| ||||| || | || ||| | || |||||||| || | Sbjct 477 CGG-CGCATCGTGGGCTGGCGCCAGAGCAGC-TCGATGCACACCGAGTTCGTGCTCGACG 420 Query 53196 CACTGGAGCAGGCG 53209 | |||||||||||| Sbjct 419 CGCTGGAGCAGGCG 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185191040795304