Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq16310 84.2 1e-11 seq1253 82.4 5e-11 >seq16310 Length=633 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||||||||| || |||||||| || || ||||| || ||||| | | Sbjct 34 CGCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTGTAGTCGGACAACGTACGCCCA 93 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCT 33268 || ||||||||||||||| ||| || | ||| |||||||| | || || ||| Sbjct 94 TCTTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGGTGGGATCCCT 147 >seq1253 Length=553177 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 |||||||||||||| || || ||||| |||||| | | || ||||| |||||||| Sbjct 468756 GTCGACTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCG 468697 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGT 33289 ||| || | ||| ||||| || | ||| |||||||| || || || | ||| Sbjct 468696 GCAAAGATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCC--- 468640 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || ||| || || || || | ||| || || || || ||||| || || | | Sbjct 468639 TTGACATTTTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAA 468580 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || ||||| Sbjct 468579 GTTTTCACGAAGATCTGCAT 468560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318665705177298