Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1253 107 1e-18 seq2866 86.0 4e-12 >seq1253 Length=553177 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||||||||| ||||||||| || ||| |||| ||||| || ||||| ||||| Sbjct 468751 CTCTTTTTGAATGTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAA 468692 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || ||||| || | || | ||||| || ||| ||||||| ||||| | Sbjct 468691 GATGAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATT 468632 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | ||||| | ||||| || || | ||||| ||||| ||||||||||| ||||| Sbjct 468631 TTCGATGGTATCCGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCAC 468572 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 468571 GAAGATCTGCAT 468560 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCAT 43967 ||| || ||||| || || ||||||||||| ||||| || | || | ||| ||| Sbjct 470418 TAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTC-TGAAAGCGTACGACCAT 470360 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | || | || || || || || |||| ||||||||||| |||| | |||||| |||| Sbjct 470359 CCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTAT 470300 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 || ||||| || || | | | || |||| || || || |||| ||| || | Sbjct 470299 CTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAG 470240 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || ||||| ||||| || ||||| Sbjct 470239 TTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 >seq2866 Length=178446 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||| ||||| || ||||| | | || || || | || |||| ||||| || ||||| Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTG-CGTCCGTCTTCCAGCTGTTTACCAGCAAAA 176716 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| |||| | |||||| || ||| ||||| || || | Sbjct 176717 ATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTT 176776 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | ||||| || || | || || || ||||| ||||| ||||| || Sbjct 176777 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACG 176836 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 176837 AAAATCTGCAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354653068738548