Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1005 197 1e-45 >seq1005 Length=1646370 Score = 197 bits (218), Expect = 1e-45 Identities = 273/382 (71%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 13135 ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTC 13194 ||| || ||||| | ||||||||||| ||||||| |||||||||||| || || || Sbjct 377489 ATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGTTC 377548 Query 13195 GTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| || ||||| || || ||||| | ||||| ||||||| ||||||||| |||||||| Sbjct 377549 GTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCAAA 377608 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 ||||| || |||||||| ||||| || || ||||| |||| | ||||||| || | Sbjct 377609 GGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAAGG 377668 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 || | | | | ||||| | ||||||||| || || | ||| || ||| Sbjct 377669 TGCATCTCTGTTACCAATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAGGCAT 377728 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTG-----TCTAAAATATAAGTA 13429 | || | ||||| || || ||| ||||| | | || || || || Sbjct 377729 TGTCTCAACAGCGTTGAA-----AAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTT 377783 Query 13430 TCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 || || || | ||| ||||| ||||| || ||||||||||| ||||||||||||||||| Sbjct 377784 TCAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAG 377843 Query 13490 AAACATCTAGCCTCTGATACCT 13511 ||||| | |||||| | ||||| Sbjct 377844 AAACAGCGAGCCTCAGGTACCT 377865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430831119925002