Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2866 145 2e-29 seq1253 145 2e-29 seq16310 93.3 1e-13 seq15804 84.2 5e-11 seq1952 84.2 5e-11 >seq2866 Length=178446 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || || ||||||| ||| | |||||||| || ||||| |||||||||| Sbjct 176658 CTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAAA 176717 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | || || || ||||| || ||||| || || || || || || || ||||||| Sbjct 176718 TCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTTT 176777 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | |||||| ||| || ||||| || || || |||||||| || | ||| || || | Sbjct 176778 CGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACGA 176837 Query 104550 ATATCTGCATTTTGT 104564 | ||||||||||||| Sbjct 176838 AAATCTGCATTTTGT 176852 >seq1253 Length=553177 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || ||||| || ||||| || |||||||| || |||||| Sbjct 470207 ATACCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCA 470148 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| | || ||||| ||||| || || | ||| ||||| || Sbjct 470147 GACAACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGT 470088 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| |||||||| ||||||| |||||| ||||| Sbjct 470087 GGGATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCA 470028 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||||| || || || ||||| Sbjct 470027 ACTTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || || | ||| | || ||||| ||||| || || || || Sbjct 468186 ATTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCG 468127 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | || || || || || || |||||||| || | | || |||||||| Sbjct 468126 GACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGT 468067 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| |||||||| || || ||||| || | || || ||| || Sbjct 468066 GGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCA 468007 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || || ||||| | ||| || ||||| |||||||||||| Sbjct 468006 ACCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCATTTTG 467953 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | ||||||||||| ||||| |||||||| || || || | ||| || || Sbjct 470414 ACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAAAGCGTACGACCATCCTCA 470355 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || || || || || | || || || ||||| || ||||| ||||| || Sbjct 470354 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGAATACCTTCCTTATCTTGG 470295 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || |||||||| | || || |||||| || || || || ||||| || Sbjct 470294 ATTTTAGCCTTAACATTTTCGATTGTGTCTGAAGGTTCAACTTCGAGCGTGATAGTTTTC 470235 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| |||||||| Sbjct 470234 CCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | |||||| |||||||||||||| ||||| ||||| |||| || ||||| Sbjct 469564 TACCAAATGCAGTGTAGACTCTTTCTGAATATTGTAGTCGGATAGCGTTCGTCCATCTTC 469505 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | ||| |||||||||||||| || | |||||| || || || || ||| Sbjct 469504 CAATTGCTTTCCAGCAAAAATAAGTCGCTGTTGGTCGGGTGGGATACCT 469456 >seq16310 Length=633 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | ||||| ||||| || || ||||||||||| || || | |||||||| Sbjct 441 TACCAAATGAAGAGTAGACTCTTTTTGGATGTTATAGTCAGACAGCGTACGCCCGTCTTC 500 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 |||||| |||||||||||||| || | ||| ||||| || || || ||| Sbjct 501 TAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGATCGGGTGGGATACCT 549 >seq15804 Length=1078 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||||||||||| |||||| |||||||| | ||| || ||| || || || Sbjct 765 CCTTCCTTATCCTGAATCTCTGCTTTGACATTTTCGATGGTGTCAGAAGGCTCAACTTCA 824 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || |||| || || |||||||| Sbjct 825 AGGGTAATGGTTTTACCCGTTAGGGTTTAAACGAAGATCTGCAT 868 >seq1952 Length=5232 Score = 84.2 bits (92), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 238648 GAATGTATTGGGCTAAAAAGATACTTGAATGGACT-AGATCTCCAAAGGAAGCTCTTAGA 238706 ||||||| ||||| ||||| || | |||||||| ||| || ||| ||||||| ||| Sbjct 314 GAATGTACTGGGCCAAAAAAATTTTGGAATGGACGGAGACGCCCGAAG-AAGCTCTAAGA 372 Query 238707 TATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTA 238766 | ||| ||||||||||||| |||| | || || | || |||| || || || Sbjct 373 CTTGCTATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTT 432 Query 238767 GGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTT 238826 || ||||||||||| || ||||| | || || | || ||| | || | | || Sbjct 433 GGCTGTATGTGGTCCATCTGTGGTATTCATGACATGGGCTGGAAGCAACGAGATGTTTTC 492 Query 238827 GGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||||| || | |||||||| || |||| | | ||||||||||| Sbjct 493 GGAAAGATTCGCTACATGAACTACAAAGGCTGTCAACGCAAATTTGATGT 542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150973519238108