Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq7916 374 2e-99 >seq7916 Length=535 Score = 374 bits (414), Expect = 2e-99 Identities = 353/448 (79%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 15346 ATCGTCGAGCTGCGCAACGTGCCGTTCCGGCAGCAGGAGCAGATCGCCTTCTACCTGCTT 15405 ||| | || |||||||||||||| ||||||||||| |||||||| |||||||||| | Sbjct 1 ATCCTGGAACTGCGCAACGTGCCCTTCCGGCAGCAAGAGCAGATTTGCTTCTACCTGTTG 60 Query 15406 GATCGGCTCCCGCGCTTCACGGGCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACCTC 15465 || ||||| ||| ||||| |||||| || ||||| |||| ||||| ||||| | |||| Sbjct 61 GACCGGCTGCCGAACTTCATGGGCGGGGCTTTCGATTCGCGCGGCAATGGCCAGTTCCTC 120 Query 15466 GCAGAAGTCGCGATGCAGCGCTACGGCGCATCGCGCATCCAGCAAGTGATGCTGTCCGAG 15525 || || ||| |||||| ||||| |||||||| |||||||| || |||||| ||||| Sbjct 121 GCTGAGTACGCCATGCAGAAGTACGGTGCATCGCGGATCCAGCAGGTCATGCTGACCGAG 180 Query 15526 TCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCGGCGTTCGAAGACGGCACGATC--G 15583 | ||||||||||||||||||||||| || ||||| ||| | |||||||| ||||| | Sbjct 181 GCTTGGTATCGCGAGCACATGCCGCCGGTCAAGGCTGCGCTGGAAGACGG--CGATCTGG 238 Query 15584 ACGGCCTCCCGAAGGATGCCGACGTGCTCGCGGACCTGCGCGCCGTACAGGTCATCAAGG 15643 | ||||| ||||||||||| |||||| | || ||||| || || ||||||||||||| Sbjct 239 ATGGCCTGCCGAAGGATGCTGACGTGTTGGCTGACCTTCGACTGGTCCAGGTCATCAAGG 298 Query 15644 GCGTGCCGCGCATCCCGGACGTCCGCGCGACCGGCCAGGACGACGGCAAGCGCCACGGCG 15703 ||||||| ||| | || ||||| ||| |||| || | ||| | || ||||| ||||||| Sbjct 299 GCGTGCCCCGCGTTCCAGACGTTCGCACGACAGGTGAAGACAAGGGGAAGCGACACGGCG 358 Query 15704 ACGCCGCCGTAGCGGTTGCTCTGGCGTATTACGCGAGCCGTGAACTGAACAAGGGACCGG 15763 ||| ||| || || || || || |||| | || ||||| || | |||||||| |||| Sbjct 359 ACGTCGCTGTGGCTGTAGCGCTTGCGTTCTTTGCAAGCCGAGAGATCAACAAGGGGCCGG 418 Query 15764 TGACCGCCAAGTCGCGGCGGCGCCGCTC 15791 | ||||||||| |||| ||||||||| Sbjct 419 TCACCGCCAAGAGCCGGCCGCGCCGCTC 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117431823181020