Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2140 89.7 3e-13 seq882 87.8 9e-13 seq12619 86.0 3e-12 seq11363 82.4 4e-11 >seq2140 Length=307830 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||| | | |||||||||| ||||| ||||||||||||||| || Sbjct 152854 AAAAAT--AATTGGCCCGTAAGAGGATCGAACTCATGACCTCCGCGTTATTAGCACGGCG 152911 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 152912 CTCTAACCAACTGAGCTAACAGGCC 152936 Score = 87.8 bits (96), Expect = 9e-13 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| ||||||||||||||| |||||| |||||| Sbjct 144219 TGGCCCGTAAGAGGATCGAACTCATGACCTCCGCGTTATTAGCACGGCGCTCTAACCAAC 144278 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 |||||||| |||||| || || Sbjct 144279 TGAGCTAACAGGCCGTGGATGA 144300 >seq882 Length=4078 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | | |||||||||| ||||| ||||||||||||||| |||||| ||||| Sbjct 3029 TTGGCCCGTAAGAGGATCGAACTCATGACCTCCGCGTTATTAGCACGGCGCTCTAACCAA 2970 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 2969 CTGAGCTAACAGGCCGT 2953 >seq12619 Length=453 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | | |||||||||| ||||| ||||||||||||||| |||||| |||| Sbjct 167 ATTGGCCCGTAAGAGGATCGAACTCATGACCTCCGCGTTATTAGCACGGCGCTCTAACCA 226 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 227 ACTGAGCTAACAGGCC 242 >seq11363 Length=511 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11467 AGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGG 11526 |||||||||| ||||| ||||||||||||||| |||||| |||||||||||||| | Sbjct 292 AGGATCGAACTCGTGACCTCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACAG 351 Query 11527 GCCGTCG 11533 ||||||| Sbjct 352 GCCGTCG 358 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261399413401876