Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1253 147 2e-30 seq2866 91.5 1e-13 seq15804 89.7 5e-13 >seq1253 Length=553177 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | |||| ||||| || | ||| |||||||| || | ||| ||||| Sbjct 468187 CATTCCTCCTCTGAGGCGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATC 468128 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || ||| | |||||| ||||| || || ||||||| || | ||||||||| || Sbjct 468127 GGACAAAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGG 468068 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||||||||| || || | ||| || ||||| || | | |||||||| | || Sbjct 468067 TGGAATACCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTC 468008 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||||||||| ||||| | || || |||||||||||||| Sbjct 468007 AACCTCAAGAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | || ||||| | ||| || || ||||| | Sbjct 468799 AAAAATTTGCATTCCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAAT 468740 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||||| || ||| ||| |||| ||| |||||| ||||||| | | || Sbjct 468739 GTTATAATCGGACAAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTG 468680 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||| ||||| ||||| | ||||||||||||||| ||| || || Sbjct 468679 CTGATCTGGGGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCGATGGTATC 468620 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||| || || | ||||||||| ||||||||||| Sbjct 468619 CGATGGCTCAACCTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 116 bits (128), Expect = 3e-21 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||| | |||||| | | || || || || || | |||||||| ||||| | ||||| Sbjct 470440 TTTAAATTCCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTAT 470381 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | | || || || |||||| ||||| || ||| | ||||| | | |||||| Sbjct 470380 AGTC--TGAAAGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTG 470323 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 || |||||||||||||| || || | ||||| ||||| || ||| ||||| | Sbjct 470322 GTCGGGAGGAATACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCGATTGTGTCTGA 470263 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||| ||||| ||||| | || || |||||||||||||| Sbjct 470262 AGGTTCAACTTCGAGCGTGATAGTTTTCCCAGTCAACGTCTTGACAAAGATCTGCAT 470206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| | ||| | ||||| ||||||||||| ||||| || | ||| || || | Sbjct 470204 CCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 470145 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || ||| |||| ||| |||||| ||||||| | | ||||||||||| || Sbjct 470144 AACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGG 470085 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||| || || || ||| | | || || | | || || Sbjct 470084 ATACCCTCCTTGTCCTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAACT 470025 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || |||||||| || || | |||||||| ||||| ||||| Sbjct 470024 TCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 >seq2866 Length=178446 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||||||| || |||| || || | |||||| || |||||||||||||| ||| Sbjct 176693 TCTTCCAGCTGTTTACCAGCAAAAATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTG 176752 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| || ||| || |||| | || || |||| |||||| Sbjct 176753 TCTTGGATTTTCGCCTTAACATTTTCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATG 176812 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || || || |||||||| Sbjct 176813 GTCTTACCCGTTAATGTCTTAACGAAAATCTGCAT 176847 >seq15804 Length=1078 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || || || ||||||||||| | || |||||| || ||| |||||| Sbjct 518 CACCAAATGTAAGGTGGATTCCTTTTGGATATTGTAATCGGACAAAGTACGACCATCCTC 577 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCT 94906 || |||||| ||| ||||||||||||| |||||||| || || |||||| Sbjct 578 CAACTGTTTGCCGGCAAAGATTAATCTCTGCTGATCAGGTGGGATACCT 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448129809564360