Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq512 120 5e-22 >seq512 Length=3718170 Score = 120 bits (132), Expect = 5e-22 Identities = 179/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 |||| |||| || || ||||| ||||| || || ||||| |||||||| ||||| || Sbjct 2863654 AACCAACTGAAATATACAATCTGGGTGCCCAGAGCCATGTAAAAGTTTCTTTTGATTTGG 2863595 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 | || ||||| | ||||||||||| || |||||||| |||| ||||| ||||| |||| Sbjct 2863594 CTGAATATACAGCCAATGTTGATGCATTGGGAACTCTACGAATTCTTGATGCAGTCCGTA 2863535 Query 193759 TGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGG-- 193816 | || |||||||| |||| |||| || || |||||| ||||| || || Sbjct 2863534 CTTGTGGTCTGGAGAAATCTGTTAAATTCTACCAAGCTTCTACCTCAGAACTCTACGGAA 2863475 Query 193817 TGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGG 193876 ||| ||| || || || ||||| || |||||| | || | ||||| ||||| Sbjct 2863474 AAGTGCAAGAGGTACCTCAAAATGAGAAA--ACTCCATTTTACCCTAGATCTCCATATGG 2863417 Query 193877 T--GTAGCAAA 193885 | ||| |||| Sbjct 2863416 TAAGTAACAAA 2863406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807264470033560