Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1005 132 5e-26 >seq1005 Length=1646370 Score = 132 bits (146), Expect = 5e-26 Identities = 252/373 (68%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 21458 AATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAAT 21517 || ||||| ||||| | ||||||||||| || |||| ||||||||| ||| || | | Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 21518 TCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA 21577 || || || ||||| | || ||||| || |||| |||||| | ||||||||||| ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 21578 AATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGT-A 21636 || | || || || || ||||| || || |||||||| || || | || ||||| || | Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 21637 TGTAGAT-TCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAAT 21695 || || ||| | ||| |||||| | ||||| | ||||| | || |||| Sbjct 377667 GGTGCATCTCTGTTACCA--ATCCATCTCATGGCCCAGTCAGCCTTCTTCGCAACACAAG 377724 Query 21696 CAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNN 21755 ||||| |||| ||| || ||||| | | ||||| | ||| | ||| Sbjct 377725 GCATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTT 377784 Query 21756 NNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAA 21815 || ||||| || || || |||||||| || ||||| || || || || | Sbjct 377785 CAATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGA 377844 Query 21816 AACATCTTGCCTC 21828 |||| | ||||| Sbjct 377845 AACAGCGAGCCTC 377857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531709309063240