Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1005 208 9e-49 seq2244 149 8e-31 >seq1005 Length=1646370 Score = 208 bits (230), Expect = 9e-49 Identities = 275/377 (73%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 |||||||| ||||| | ||||| ||||||||||||||||| || |||||| ||| ||| Sbjct 377487 AAATGTTTGAACATAACGCATGCAAAATCGCAGTGCAGACCTTCATCTCTAGAAATCAGT 377546 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 ||||| || || || ||||| ||||| | || |||||||||||||||||||| | ||| Sbjct 377547 TCGTTCGAGAATGTCAGTCCTGGCATCAAACCTCGCTTTTTAAGCCAAAATATTGCAGCA 377606 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || || ||||| || || || ||||| || |||||||| || | || ||| || | ||| Sbjct 377607 AAGGAACCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCTACAATTCTTTCACTGTAA 377666 Query 33466 ---CCGGCGCTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33521 | | |||| | ||||| || || ||||| || |||||||| |||||||| Sbjct 377667 GGTGCATCTCTGTTACCAATCCATCTCATG-GCCCAGTCAGCCTTCTTCGCAACACAAGG 377725 Query 33522 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 ||| || || | || || || || | | ||||| | ||| || | || || || Sbjct 377726 CATTGTCTCAACAGCGTTGAAAAGTTTCATCCTTTCAGCAGAATCCTTGATGTAGGTTTC 377785 Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || || || || ||||| || || || || ||||| ||||| || || || || ||||| Sbjct 377786 AATTAACAGGCTGTACATCTCTGAGTGGATATTTTCCATGGCTATTTGGAAACCATAGAA 377845 Query 33642 ACATCTAGCCTC-GGTA 33657 ||| | |||||| |||| Sbjct 377846 ACAGCGAGCCTCAGGTA 377862 >seq2244 Length=477090 Score = 149 bits (164), Expect = 8e-31 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 63125 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 63184 ||||||||| ||| ||||| ||||||||| ||| | | || || |||||||||| ||| Sbjct 404239 TGTATACAAAGCTTCAAACTCTTCTCCCCAAGCATCGGCTAAACCCGGACATTCATTCGG 404298 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCC 63243 |||||| | |||||||||||||| | ||| || || | ||| || ||||||||||||| Sbjct 404299 ACACATAAGAGACCACTCTCCGTC-TGATTCAACGCGCTGCATGAAAAGATCAGGAATCC 404357 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 ||||||| ||| | || | | | | || || ||||| ||||||||||| |||| Sbjct 404358 AAAGAGCGTAAAACAAGTCACGTGCACGGTTCTCTTCTTTTCCGGTATTCTTTTTTAGAT 404417 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 | || || | | | ||| |||||||| ||||| | ||| || || | | |||| || | Sbjct 404418 CAAGAAATTCAAATACATCCGAATGCCATGGTTCTAGGTAAATTGCAAAAGCTCCTGGAC 404477 Query 63364 G 63364 | Sbjct 404478 G 404478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62622 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 62681 |||||||| ||||||||||| |||||||| || | ||||||||| ||| ||||| | Sbjct 403526 TCTAATGCGCCGTAATAAATCGTTTCGAAAATTTGCTTATTTAGCAGTTGCGCTTCTTCG 403585 Query 62682 CTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCG 62741 |||||||| ||||| | || ||||| || || || || |||||||| ||||| || Sbjct 403586 CTATCAAACGGATAGCGCATTAGGATAAAAGCATCAGCCAAGCCTTGAACTCCAATTCCT 403645 Query 62742 ATAGGTCTATG 62752 || || | ||| Sbjct 403646 ATCGGACGATG 403656 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| | ||| || || ||||| || || ||||| || ||||| || | Sbjct 403966 ATCTCCGTGCACAAATTGCTGCATTTGATCGTGCCCAAATTCTGCTGATTTGATTTGCGG 404025 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 63061 ||||| ||||| ||||| || ||| | ||||| || ||||||||||| ||||| || Sbjct 404026 TTACATGCATCTTTATATAGGATGTACGGAGTTCCCGTTTCAATCTGGGATTCGAT 404081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622722931221160