Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1952 107 2e-18 seq1253 95.1 1e-14 >seq1952 Length=5232 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 71744 ATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCT-CGAGTA 71802 ||||||||||||||||| ||| | || ||||| | || ||||| | || || || | Sbjct 316 ATGTACTGGGCCAAAAAAATTTTGGAATGGACGGAGACGCCCGAAGAAGCTCTAAGACT- 374 Query 71803 TTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGG 71862 | |||| ||||| ||||||||||||||| | || || | || |||| |||||||| || Sbjct 375 TGCTATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTTGG 434 Query 71863 TTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTGTTTGG 71922 || |||||| ||| || ||| |||| || | ||| |||| | || || || Sbjct 435 CTGTATGTGGTCCATCTGTGGTATTCATGACATGGGCTGGAAGCAACGAGATGTTTTCGG 494 Query 71923 TAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGT 71970 || |||||||| ||||| || || || ||||||| || |||| Sbjct 495 AAAGATTCGCTACATGAACTACAAAGGCTGTCAACGCAAATTTGATGT 542 >seq1253 Length=553177 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | ||||| ||||| | ||| | Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || || || || || ||||| || |||||||| || Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACG---TCAGCGACTAT 26945 ||| | || || | || |||||| || || || |||| | | | || |||| ||||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTA-CGCTTTCAG--ACTAT 470382 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||||||||||| | ||| | || | | ||| | ||||||| Sbjct 470383 AACATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGAA 470434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478490075552720