Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2244 93.3 1e-13 seq2190 91.5 4e-13 seq1005 86.0 2e-11 >seq2244 Length=477090 Score = 93.3 bits (102), Expect = 1e-13 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| || ||||| || || || || || ||| | ||| | ||||| |||||||| || Sbjct 404473 AGGAGCTTTTGCAATTTACCTAGAACCATGGCATTCGGATGTATTTGAATTTCTTGATCT 404414 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 || || || |||||||| || ||||||||||| |||| || || |||||| | Sbjct 404413 AAAAAAGAATACCGGAAAAGAAGAGAACCGTGCACGTGACTTGTTTTACGCTCTTTGGAT 404354 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 | |||| | ||| ||| ||||||| || ||| | ||||| || | || || | Sbjct 404353 TCCTGATCTTTTCATGCAGCGCGTTGAATCAGACGGAGAGTGGTCTCTTATGTGTCCGAA 404294 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 |||||||| ||| | |||||| ||||| || || | || ||| | || ||||| Sbjct 404293 TGAATGTCCGGGTTTAGCCGATGCTTGGGGAGAAGAGTTTGAAGCTTTGTATACAAAGT 404235 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 363091 GGTCTATATGATGGTGTTACAACTGTTCAGCTAGACAATCTTGCCGTAGAAACTGCAACT 363150 || || ||| |||||| ||||||||| | || || |||||||| | ||||||||| || Sbjct 405515 GGCCTCTATCCTGGTGTGACAACTGTTGAACTTGATAATCTTGCTGCAGAAACTGCTGCT 405456 Query 363151 TATCTGACCATGACGCATCCTGATTACTCCAAACTGGCTGCTCGCATTGCAGTTTCGTCT 363210 |||| | | |||||||||||| | | |||||||||||||| || |||||| | Sbjct 405455 ACAATGACTACTAAGCATCCTGATTATGCAATCCTGGCTGCTCGCATAGCTGTTTCGAAT 405396 Query 363211 CTTCATAAA 363219 ||||| ||| Sbjct 405395 CTTCACAAA 405387 >seq2190 Length=2111488 Score = 91.5 bits (100), Expect = 4e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 111626 TCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACC 111685 ||| ||||| ||| | | || ||||| |||| ||||| | |||||| | ||||| Sbjct 1172599 TCGACGCATGATTCTTACAGCTTGGAATCCAACGGCATTACCACTAATGGCGTTACCACC 1172658 Query 111686 ATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCA 111745 || ||| || |||||| |||||| | || || || |||||||||||||| Sbjct 1172659 GTGCCATTGCTTGGCCCAGTTCTATGTAGCAAATGGTGAACTGTCTTGCCAAATGTATCA 1172718 Query 111746 GCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTAC 111805 ||||||||||||| ||| | |||||||| ||||| || || || || | | || || Sbjct 1172719 AAGATCTGCTGATATGGGTTTAGGTGTTCCCTTTAACATAGCCAGCTATTCTTTGCTGAC 1172778 Query 111806 TTGCTTAATCGCTCA 111820 ||| | || ||||| Sbjct 1172779 ATGCATGATAGCTCA 1172793 >seq1005 Length=1646370 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || || |||| ||||||||||| | ||||||| ||||| ||||| || || || ||| Sbjct 377126 TACAAAGTCGAAAATCCATTTGATTTCATGGAACACATTTCGCTTGAGGGGAAAACAAAT 377067 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || |||| |||||||||||| || || ||||| || ||| Sbjct 377066 TTTTTTGAGAAAAAAGTTGGTGAATATCAGAAGGCAGGCGTGATG 377022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302872645822382