Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1253 105 6e-18 seq1952 82.4 7e-11 >seq1253 Length=553177 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||| || ||| | |||||| | || || ||| ||| | Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAG-CCATC 468618 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | | |||||||| | ||||| ||| ||| ||||| |||||||| || || ||||| Sbjct 468619 GGATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCA 468678 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | ||| ||||| | ||||||| | | | ||||||||| Sbjct 468679 GCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAA 468738 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||| || || |||| ||||| Sbjct 468739 CATTCAAAAAGAGTCGACTCTTCACTTAGT 468768 Score = 100 bits (110), Expect = 2e-16 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | || || ||||||| || | Sbjct 470206 ATGCAGATCTTTGTCAAGACGTTGACTGGGAAAACTATCACGCTCGAAGTTGAACCTTCA 470265 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || || || || ||||| || |||||||| || Sbjct 470266 GACACAATCGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGGTATTCCTCCCGACCAG 470325 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACG---TCAGCGATTAT 24167 || | ||||| | || ||||||||| || || |||| | | || |||| | ||| Sbjct 470326 CAACGTCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGTCGTA-CGCTTTCAG--ACTAT 470382 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAA 24224 |||||||||||||||||||| |||||||||| ||| | | | |||||| | ||| Sbjct 470383 AACATTCAAAAAGAATCTACCCTTCATTTAGTTTTACGTCTTCGTGGAGGAATTTAA 470439 >seq1952 Length=5232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 60965 TACTGGGCCaaaaaaaTATTGGAATGGACACCGACGCCCGAAGAGGCACTGAACCGTGCG 61024 ||||||||||||||||| ||||||||||| |||||||||||| || || | | ||| Sbjct 319 TACTGGGCCAAAAAAATTTTGGAATGGACGGAGACGCCCGAAGAAGCTCTAAGACTTGCT 378 Query 61025 ATCTACCTCAACCAGCGATACGCTGTCGACGGTTGCGATCCCAGCGGTTATGTAGGATGT 61084 || || || ||| | ||||| | | || || | || || || |||||||| || ||| Sbjct 379 ATATATCTGAACGATAGATACAGTTTAGATGGAAGAGACCCTAGTGGTTATGTTGGCTGT 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429785087224155