Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1253 82.4 6e-11 >seq1253 Length=553177 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| | || || ||||| |||||| | || ||| ||| | Sbjct 468560 ATGCAGATCTTCGTGAAAACTTTAACCGGGAAAACTATTACCCTTGAGGTTGAG-CCATC 468618 Query 115346 G-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 | | || | | | | || || ||||||| || || |||||| | ||| ||||| Sbjct 468619 GGATACCATCGAAAATGTCAAGGCAAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCA 468678 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | ||| || || || || ||||||| || || |||||||||| Sbjct 468679 GCAGCGTCTCATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGTACTTTGTCCGATTATAA 468738 Query 115465 CATTCAAAAAGAGTCTACT 115483 ||||||||||||||| ||| Sbjct 468739 CATTCAAAAAGAGTCGACT 468757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425194699072120