Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1253 125 7e-24 seq2866 98.7 9e-16 >seq1253 Length=553177 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || ||||| || | |||||||| ||||||||||| |||||| | Sbjct 468786 CCGCCGCGGAGACGTAGAACTAAGTGAAGAGTCGACTCTTTTTGAATGTTATAATCGGAC 468727 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || || |||| | ||||||||| || || || Sbjct 468726 AAAGTACGACCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGGGGA 468667 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| || ||||| | || | ||||| | | ||| | Sbjct 468666 ATGCCTTCCTTGTC-TTGAATTTTTGCCTTGACATTTTCGATGGTATCCGATGGCTCAAC 468608 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| ||||||| |||||| ||||| |||||||| Sbjct 468607 CTCAAGGGTAATAGTTTTCCCGGTTAAAGTTTTCACGAAGATCTGCAT 468560 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| ||| || || | ||| | |||||||||||||| ||||||||||| Sbjct 469184 GCCACCGCGCAGACGAAGAACCAGATGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGA 469125 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||| || || || || || |||| ||||| ||||| || ||||| Sbjct 469124 TAAGGTACGACCATCCTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATCAGGAGG 469065 Query 131127 GATTCCT 131133 |||||| Sbjct 469064 AATTCCT 469058 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || ||||| | || || ||||| || |||||||||||| || || || Sbjct 468171 CGCAGAACCAAATGGAGAGTTGATTCCTTCTGGATGTTGTAATCGGACAAAGTACGGCCA 468112 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| || |||| ||||| ||||| || || || || ||||| || Sbjct 468111 TCCTCAAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCAGGTGGAATACCTTCCTTA 468052 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || || || ||| | | ||| | ||| || | | ||| | || | || | | Sbjct 468051 TCTTGAATCTTGGCCTTAACATTCTCAATAGTGTCAGAAGGCTCAACCTCAAGAGTGATG 467992 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || | || || || || |||||||| Sbjct 467991 GTTTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 467957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | ||| | || |||||||| ||||||||||| || | Sbjct 470204 CCACCTCGGAGTCGAAGCACCAGATGCAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 470145 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || | |||||| || || |||| | ||||||||| || || ||| Sbjct 470144 AACGTACGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGATCTGGTGGG 470085 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| | | || || | | || | ||||| | | || | Sbjct 470084 ATACCCTCCTTGTC-CTGAATCTTAGCTTTTACGTTTTCTATGGTATCCGATGGTTCAAC 470026 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| |||||| || || | ||||| ||||| || ||||| Sbjct 470025 TTCGAGAGTAATGGTTTTCCCCGTCAAGGTTTTCACGAAGATTTGCAT 469978 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| | |||||||| | ||| || || ||||||||||| || || Sbjct 470432 CCTCCACGAAGACGTAAAACTAAATGAAGGGTAGATTCTTTTTGAATGTTATAGTCTGAA 470373 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | ||| |||||||| ||||| Sbjct 470372 AGCGTACGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGAGGA 470313 Query 131128 ATTCCTTCTTTGTCGGTGATTTT 131150 || ||||| || || |||||| Sbjct 470312 ATACCTTCCTTATCTTGGATTTT 470290 >seq2866 Length=178446 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 131045 CCTTT-TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| |||||||||||||| | ||||| ||| || ||||| || || || | Sbjct 176657 CCTTTCTGAATGTTGTAATCAGATAAAGTGCGTCCGTCTTCCAGCTGTTTACCAGCAAAA 176716 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || ||||| |||||||| ||||| || ||||| ||||| ||||||| ||| | | Sbjct 176717 ATCAAACGTTGCTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTT 176776 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||||| | | ||| | || | ||| | ||| ||||| |||| || || ||| Sbjct 176777 TCGATGGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTACCCGTTAATGTCTTAACG 176836 Query 131224 AAAATCTGCAT 131234 ||||||||||| Sbjct 176837 AAAATCTGCAT 176847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471842869491840